Gene VSAL_II0901 details

Gene Information

• Locus tag: VSAL_II0901
• Symbol: tonB3
• ID: 6962237
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: -
• Start bp: 985955
• End bp: 986578
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643382167
• Product: TonB3 protein
• Protein accession: YP_002265198
• Protein GI: 209809659
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0810] Periplasmic protein TonB, links inner and outer membranes
• TIGRFAM ID: [TIGR01352] TonB family C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.686601
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTTAGGT TATTGATGGC GTTACCTATT GCACTGGCTA TTAGTATTGC TTTATTTTCC 
GTGATGGCAT GGATGGTAGA CAATGGTAAC CAAGGAAAAC CGGAAGCCAG TGAAAATCTA 
AGCTTTACTA TGATGATGGT TGAACCTGAA AGTGATCTTC AACGTCGTCA ACGTTCTGTT 
CCTGAGCAGC CTAAACCGCC AGAATTACCA CCAGAAACGA AAATATCTCA ATCGCAATCA 
GAGATGTCTT CGGTGATGCC TGTAACACCA ATGTCTTCGG CTGGTTTAGA TACGGCGATT 
AACGGATTCA AAATAAGCGC TCCAACGTCG TTCGGAAGTT TTACGACGAA TCAACAGGCA 
ATGCCATTGT ATCGCGTAGA ACCACGATAC CCGAGTAGAG CATTAAAACG AAAAATTGAA 
GGCTACGTTA TTATGTCTTT TTCTATTGAT GAAACGGGCG AACCTTTTGA TATAGAAGTC 
AAAGAAGCGG AGCCAAAACG AATATTTGAT CGTGATGCGG TTCGGGCACT AAAACAATGG 
AAGTACCAAC CTAAATTGGT AGAAGGGAAA GCCATTGTTC AGCAGAATCA AACCGTTAGA 
TTGGAGTTTA AATTAGCCAA ATGA 

 

Protein sequence

MLRLLMALPI ALAISIALFS VMAWMVDNGN QGKPEASENL SFTMMMVEPE SDLQRRQRSV 
PEQPKPPELP PETKISQSQS EMSSVMPVTP MSSAGLDTAI NGFKISAPTS FGSFTTNQQA 
MPLYRVEPRY PSRALKRKIE GYVIMSFSID ETGEPFDIEV KEAEPKRIFD RDAVRALKQW 
KYQPKLVEGK AIVQQNQTVR LEFKLAK