| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0881 |
|---|
| Symbol | |
|---|
| ID | 6962440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 965846 |
|---|
| End bp | 967030 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643382149 |
|---|
| Product | drug resistance translocator protein |
|---|
| Protein accession | YP_002265180 |
|---|
| Protein GI | 209809641 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0515514 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTAT TTAATACAAC CGATTTTAAG AAAACCCCTT TATTTCTCGC AATGATGATC
ATTGCAACAG GTCAAGTAGG GGTGAGTATT TATTTGCCAT CATTGCCCTT AATCAGCCAC
GATTTAGGTG TTTCTTCCGC TGATGTGCAA TTACTTGTTA CGCTATTTTT AGTGGGCTTT
GGCGTGTCCC AATTATTCTA TGGACCCGTG TCTGATGCGA TTGGACGTCG GCCTATCTTT
ATTTTAGGTC AAGGGATTTA TTTATTAGGC ACTCTTTTGT GTGTATCTAT GACGGATAAT
TTTACTGCAT TAGTGTTAGG GCGTTTACTG CAAGGTTTAG GCGCGGGGAG TGCCTCAGTA
TTAGGACGAA GTGTACTGCG AGACAGCTAC AGCGGCTATC ATTTGACTAA AGCCATGTCG
TATATTTCGA TCACGGCATC TATCTTACCA ATATTAGCGC CGGTTATTGG AGGTTGGATA
GCATGGCATT TTAGTTGGGA ATGGGTCTTT GGTTTTGTTT TATTGTATCT CATTGGCATT
TTAACATTAG GGTATTTTAT TCTTCCTGAA ACTCTGCCTT ATAAACCAAA AAAATTCAGC
TTAGCTCAAA CATTACGGGA TTACGGTGCT TTATTTCGTA ATGCTCAGGT GATCTCTAGT
GCCAGTTTTA ATTGGATCAG TTATTTAGCT AGCTTAGTCT CTGTATCATT ATTGCCTTTT
TTATTACAGG GTGATTTAGG GTTAACGACG GCTGAGTATG GCGAGATAAT GATCATCCCT
TCGGCTGGGT TAATGATGGG CAGTTTTATT CTGAACAGTC TAAATAAAAA GTGGTCAATT
AATCAGCTAA TATGTCTTGC TCTCGTCATC ATGTCAATTT CTGGTATATG GTTGGTTGTT
TTTACTACGT CTCTATTTTC GTTAATATTT GGGTTTACAT TATTAGCGGT TTCACAAGGG
ATCATCTTTC CATTGTCGAT TACTTTACTA TTGTCACCAC ACACTAAAAA CGTAGGCACT
ATTTCTGCGT TATCTGGTTC TATCCAAATG TGTTTATCAG GTATTCTTGG TGGCTATTTA
GTTAAGCATT GGGTTGTAGA TCAAAACAGT TTAGGTGTCT TTTATTTATT GATTGCCTCT
ATGATGTTGT GTGTATTGTT TTGGAATAGG AAAGTTAGGC TATAA
|
|---|
| Protein sequence | MTLFNTTDFK KTPLFLAMMI IATGQVGVSI YLPSLPLISH DLGVSSADVQ LLVTLFLVGF
GVSQLFYGPV SDAIGRRPIF ILGQGIYLLG TLLCVSMTDN FTALVLGRLL QGLGAGSASV
LGRSVLRDSY SGYHLTKAMS YISITASILP ILAPVIGGWI AWHFSWEWVF GFVLLYLIGI
LTLGYFILPE TLPYKPKKFS LAQTLRDYGA LFRNAQVISS ASFNWISYLA SLVSVSLLPF
LLQGDLGLTT AEYGEIMIIP SAGLMMGSFI LNSLNKKWSI NQLICLALVI MSISGIWLVV
FTTSLFSLIF GFTLLAVSQG IIFPLSITLL LSPHTKNVGT ISALSGSIQM CLSGILGGYL
VKHWVVDQNS LGVFYLLIAS MMLCVLFWNR KVRL
|
|---|
| |