| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0835 |
|---|
| Symbol | |
|---|
| ID | 6962182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 920870 |
|---|
| End bp | 921763 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643382106 |
|---|
| Product | HTH-type transcriptional regulator, LysR-family |
|---|
| Protein accession | YP_002265138 |
|---|
| Protein GI | 209809599 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000051165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTATTACCCG ATCTTGCTAC GTATATTGTA GTCGTTAATG AAGGAAGCTT TACGGCTGCA
GCTAAAAAAC TTGGGGTAAC GCCATCTGCG TTGAGTAAGC TAATTACTCG ATTAGAAAGT
GCGCTATCTG TAAAGTTATT TGAGCGAACA ACACGTAGCT TGCTTATTAC TGAGTCGGGT
AAAAAAATAT ATCAGCAATC CGTCATTATG GTTGAGGCGG CTCAGCAGGC GATTGATATT
TCTAGTTCAG AGCATATTGT GCCGTCTGGA AGCTTAACGG TGGCTGCGCC AAAAGCATTT
TTAACCATAG TATTGCAAGC GTTAGTCACG CCTTTTTTAA TTAAATATCC TAAGATCCAA
CTTAAGCTAA GAGCCTCCGA TGGTGATATA AATATGATAG CTCAAGGTAT TGATGTGGTC
TTTCGGTTAA CGGATAAACC GACGGAAGGA TTAATTATGA AGGAGATAGG GAAGGTTAAT
TTAAGTTTGT GTGCAAGCCC CTCTTATATA GAAGAGAGAG GGTTGCCTCT TCACCCAAAA
GAATTACCTA ATCATGATTG TTTGTATTTA GGAGAAACAA CAGACCATAT ATGGGAATTT
GTTAAAGGAG AAGAGAGCCA CGTAATTGCA GTAACGGGGC GATATGCTGT TAATCACTCT
CAAATGAGAT TAAACGGAGT GAGAGATGGA TTTGGTATTG GGATATTTCC TGATTTTGTA
ATTAAAGAAG CGTTAGCGAA TAACGATGTT GTTCCTGTTC TTTCTGATTG GCAGATAAAA
GGAAATTATC ATGGTGTTAT TGCGATGCAG TATGCACAAA ATAAATACAT GCCATCAAGA
ATAAAAGTAT TTACTGAGTT TGTAAGACAG AATTTAATGA AAGAGCAGAG CTAG
|
|---|
| Protein sequence | MLPDLATYIV VVNEGSFTAA AKKLGVTPSA LSKLITRLES ALSVKLFERT TRSLLITESG
KKIYQQSVIM VEAAQQAIDI SSSEHIVPSG SLTVAAPKAF LTIVLQALVT PFLIKYPKIQ
LKLRASDGDI NMIAQGIDVV FRLTDKPTEG LIMKEIGKVN LSLCASPSYI EERGLPLHPK
ELPNHDCLYL GETTDHIWEF VKGEESHVIA VTGRYAVNHS QMRLNGVRDG FGIGIFPDFV
IKEALANNDV VPVLSDWQIK GNYHGVIAMQ YAQNKYMPSR IKVFTEFVRQ NLMKEQS
|
|---|
| |