Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0721 |
Symbol | nagE |
ID | 6962088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 793484 |
End bp | 794944 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643381996 |
Product | PTS system permease for N-acetylglucosamine and glucose |
Protein accession | YP_002265034 |
Protein GI | 209809496 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [COG1264] Phosphotransferase system IIB components |
TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component [TIGR01998] PTS system, N-acetylglucosamine-specific IIBC component |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.729002 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATGTAC TTGGTTATAT GCAGAAAGTA GGTAAGGCGC TGATGGTTCC CGTCGCTACG CTACCTGCTG CTGCAATCTT AATGGGTGTT GGTTACTGGA TGGATCCAAC AGGCTGGGGC GCAAATAGCG TACTTGCTGC ATTTCTAATT AAATCAGGTG GCGCTATTAT CGATGTAATG CCAATGCTAT TTGCGATTGG TGTTGCGTTT GGTTTAAGTA AAGACAAAAA TGGTTCAGCG GCACTTGCCG GTTTTATTTG CTTTACTGTT GTTACTACCC TTTTATCTCC AGCGGTTGTT GCTCAACTTG AAAGCATTCC ATTGGATCAA GTTCCTTCTG CATTCGCAAA AATCAACAAC CAATTTGTTG GTATTATTGT CGGTATTATT TCTGCTGAAA TTTACAACAA ATACTCAACG GTTGAACTAC CAAAAGCATT AGCTTTCTTT AGTGGTAAAC GTCTTGTTCC TATCCTGACA TCAATTGCGG GTATGGCATT ATCATTCGTT CTTTTATACG TATGGCCTGC CATTTTTGAC GCCCTAATCT CTTTCGGTAC TCAACTTCAA TCAATGGGTG CGGTTGGTGC TGGTCTGTTC GGTTTCTTTA ACCGTTTAAT GCTTACAGTT GGTATGCACC ATGCCCTTTA CCCTGTATTT TGGTTTGATG TTGTTGGTAT TAACGACATT CCAAATTTCT TAGGTGGTGC ACAATCTATT GCTGATGGCA CTGCGGTTAT CGGTCAAACG GGTATGTACC AAGCGGGTTT CTTCCCTATC ATGATGTTTG GTCTGCCAGG CGCAGCTCTG GCTATTTACC ATTGTGCAGA AGAACGCAAT AAAGCCGCTG TTTTCTCTAT CATGCTTGCA GCAGCAATGG CGTCATTCTT TACTGGTATT ACAGAACCTC TAGAATTCAG CTTTATGTTC CTTGCTCCAT GGTTGTATTT AATTCATGCA ATCTTAACGG GTATTTCTTT ATACATCGCT GCAAGTATGC ATTGGATGGC AGGTTTTGGT TTTTCAGCAG GTCTTGTTGA TTTCGCTTTA TCAACCCAGA ATCCATTGGC GGTTAAGTGG TACATGCTTA TTCCACAAGG TCTTGTATTC TTTGTTCTTT ACTACACTAT ATTTAGATTT GCGATTAAGA AGTTCAACTT CCTAACTCCG GGTCGTGGTG AAGACATGAA TAAAGATGAT TCTGTAGAAG AAAACATTAC TGATGTTGCC ACTGCGTATA TCGAAGCAAT TGGTGGTTCA GAAAATATCC TAGAAGTAGA TAACTGTATT ACACGTCTAC GTTTAACCGT GAAAGATTCA AGCCTTGCTG ATAGCGACAA ACTTAAATCT CTTGGTGCCA TTGCAGTGGT TCCAATGGGT AAAGGTGGTC TGCAAGTTAT TATAGGCTTA GGAAAAGTGG ATAGAGTCGC TGCAGAAATG AAAGTGATTT TAAAAGCCTA A
|
Protein sequence | MNVLGYMQKV GKALMVPVAT LPAAAILMGV GYWMDPTGWG ANSVLAAFLI KSGGAIIDVM PMLFAIGVAF GLSKDKNGSA ALAGFICFTV VTTLLSPAVV AQLESIPLDQ VPSAFAKINN QFVGIIVGII SAEIYNKYST VELPKALAFF SGKRLVPILT SIAGMALSFV LLYVWPAIFD ALISFGTQLQ SMGAVGAGLF GFFNRLMLTV GMHHALYPVF WFDVVGINDI PNFLGGAQSI ADGTAVIGQT GMYQAGFFPI MMFGLPGAAL AIYHCAEERN KAAVFSIMLA AAMASFFTGI TEPLEFSFMF LAPWLYLIHA ILTGISLYIA ASMHWMAGFG FSAGLVDFAL STQNPLAVKW YMLIPQGLVF FVLYYTIFRF AIKKFNFLTP GRGEDMNKDD SVEENITDVA TAYIEAIGGS ENILEVDNCI TRLRLTVKDS SLADSDKLKS LGAIAVVPMG KGGLQVIIGL GKVDRVAAEM KVILKA
|
| |