| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0572 |
|---|
| Symbol | |
|---|
| ID | 6961973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 625543 |
|---|
| End bp | 626481 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643381859 |
|---|
| Product | outer membrane protein, putative porin |
|---|
| Protein accession | YP_002264897 |
|---|
| Protein GI | 209809359 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TATTACTATC AACGGCTATA TTGTCTTCTC TTACATCAAC CACTCTCTTC
GCTGCAACCG TTTATGATCA AGACAATACT CAATTAAAAG TTGGTGGCAG AGCCGAAGCA
CGAGCGAATA TCTCAGACAA TAATGAAACA ACGGACAACA GTTCATTTAA AGATAAAAGT
CGTGCACGTA TTAATTTAAA AGGTAAAACA AAAATCAATG AAAGCTTAGG TGCCTTTGGT
ACTTATGAAG TCGAAATTGG GAGTGGTAAA GACAATACAG TAAATACCCG TTACCTATTT
GCAGGCTTAA GCACTACCGT TGGTAACTTC TCTTACGGCC AACAAGATTC AGCGCAAGTT
ATGCTCACCG ATTACACCGA TATTCTTGCT ACGTTTGGTG GTGACGCTGC CGATTTGACG
ACTGGCAACA AAGATAAGCG TGAAAACAAC TTTTTATACT CTGGTGAATT TGATGCATTA
ACAGTGCAGG CAAACTACAT TGCCAGCAAT GAAAAAGACG ATGATAGCTT TGGTATTTCG
GGCATGTACG CCTTACCAAT GGGATTGGAC TTTGGCCTAG GTTACACATC AGGACAGCAA
GCCTCAACAG GGTTAAATTC TGTCGATGCC GACCAAATCA ACCTCGCAAT TCGCTATACA
GTAAATGCTT TCATGGTATC AGGCTTATTT ACTACTGGTG AAATCGATAA TAAAGACGCC
AATGGTTACG AACTGGCTGC GGCTTATAAA CTTGACCAAT GGGTTTTCCA AGGCGTATAT
AACTTTCAAG ACGTAGACAG TACCGACACA GAAAACAACG TGGCTATTGA AGCCATTTAC
AAACTCAATA AAAGTTTCCG CACGTATGCA GGCTACAAAT TTGAACAAAT CGACAATAAA
GACGACCAAC TGCAATTTGG TCTACGTTAC GATTTCTAA
|
|---|
| Protein sequence | MKKLLLSTAI LSSLTSTTLF AATVYDQDNT QLKVGGRAEA RANISDNNET TDNSSFKDKS
RARINLKGKT KINESLGAFG TYEVEIGSGK DNTVNTRYLF AGLSTTVGNF SYGQQDSAQV
MLTDYTDILA TFGGDAADLT TGNKDKRENN FLYSGEFDAL TVQANYIASN EKDDDSFGIS
GMYALPMGLD FGLGYTSGQQ ASTGLNSVDA DQINLAIRYT VNAFMVSGLF TTGEIDNKDA
NGYELAAAYK LDQWVFQGVY NFQDVDSTDT ENNVAIEAIY KLNKSFRTYA GYKFEQIDNK
DDQLQFGLRY DF
|
|---|
| |