| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0569 |
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| Symbol | |
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| ID | 6961970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 621662 |
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| End bp | 623347 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381856 |
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| Product | putative RNA pseudouridylate synthase |
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| Protein accession | YP_002264894 |
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| Protein GI | 209809356 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAC ATCAATTTAC CCGATTCTCG ACGAGCATTG ATCAGTACTC ATTACCTGCG
AATTTTACGT TCCCATATTA CTATGTCCCT CACCCATTAG CGTTACTAGC AATGAGTGAG
CTACAGCATT ACCTAGACAC TCAACAAGAA TGGCAATACG ACTTTACCGC GATTGGACAC
ATGTTTGGCG TGCTTGTCGT TAAAAACCAA CAAGGAGATA TCGGTTATTT ATCTTCTTAT
GCAGGAAACG AGTTAACTAA TCATAAAATA CACAGTGACA CTCCTAGCCT TTTTGTCGAT
ACAATTGTTG ACCATCACTA TGATCAGCCT TACTTTACTG AAAAAACACA ACATATCAAT
ACGCTTCGCC ACCATATATC TACATTAAAA AGCACCCCAG AATTTAGTGC CCTTACTGAC
AAATTGGTGT TAAAAAATTC ACAAGCTGAG CAAGAAATCA CTGCATTTCA ACAATCGATG
GCAAAAAGTA AGAAGCAGCG TAAACAATTA CGAACAGAAG CAGAATCAAA CCCTGCATCA
ACAGTAAACA CAGCACAACT TGAAGCGTTA ATTCACGATC TTGGTAACCA AAGCAGCCGA
GAAAAAAGAG AATTAAAAGC CTTAAAAGAG CAATGGAAAG CCAGCCTTGC AGAATTAACG
ATTCAACATA ATACGATGCT TACTTCAATT GCTCAGAAAG AAAATGAGTA CAAACAACTG
TCTAAAAATC TAGACATCGA AAAGTTACGA GCTTGCCAAT TTACAAACCA ATTGGGCTCA
ACAAAAAGCT TATATGATTT ATTCACTGCT GTTGATGATG AATCATCTCC GATTTCACAC
TCAAGTGAAG AGAATGCACC CAAATTACTT CAAGCGGCCT TTAAAATGGG ACTAACCCCT
TTAGCGCTCG GAGAGTTTTG GTGGGGTTCT TCACCTTATG AAACAATCAG ACAACACAAA
AATGTCTATC CTGCCTGTCA GAGTAAGTGT TTTGAAATCT TAGAGCACAT GCTTGAAGGA
ATAGAACTGG ATGACAATTC ATTAAAACAA ACGCCCTCTT ATGGAAAAGA TCTTGAGATC
GTTTATGAAG ATGAGGCCAT TGTTATCGTA AACAAACCGG CTGAATTTTT ATCGGTTCCA
GGGAAATTTA TTACAGACTC AGTACAGACT CGCATTAAAG CGCGTTATCC ACAGGCAACA
GGTCCATTAA TCGTACACCG CTTAGACATG TCGACGTCAG GTCTATTAGT ATTAACTTTA
ACGGCTGAAA CAAATAAGCA GGTACAAAAG CAGTTTATTG ATAGAACGGT AGAAAAACGC
TACACCGCGC TTCTTGAGGG TAACATTGCC TTAAATGATG GCATCATAGA TTTACCTCTC
ACTGGTGATT TAGAAGACAG ACCACGACAA ATGGTAGACC ATAAGCAAGG CCGAAAAGCA
GAAACCACTT TTCAAGTAAT AGAGCGAAAC AACAACCAAA CAAAAGTCTA CCTTTACCCA
AAAACAGGTC GAACTCACCA GTTGCGCGTA CATTGTGCTC ATCAAGCGGG TTTGGGCACC
CCTATTGTCG GTGATGACTT ATATGGGTTT AAATCTAACC GATTGCATCT ACATGCTGGG
TACCTAAAAT TTACGCACCC TATCACTGGT AACGAGGTCG AATTTTCAGT GAAAGATGAT
TTTTAA
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| Protein sequence | MTQHQFTRFS TSIDQYSLPA NFTFPYYYVP HPLALLAMSE LQHYLDTQQE WQYDFTAIGH
MFGVLVVKNQ QGDIGYLSSY AGNELTNHKI HSDTPSLFVD TIVDHHYDQP YFTEKTQHIN
TLRHHISTLK STPEFSALTD KLVLKNSQAE QEITAFQQSM AKSKKQRKQL RTEAESNPAS
TVNTAQLEAL IHDLGNQSSR EKRELKALKE QWKASLAELT IQHNTMLTSI AQKENEYKQL
SKNLDIEKLR ACQFTNQLGS TKSLYDLFTA VDDESSPISH SSEENAPKLL QAAFKMGLTP
LALGEFWWGS SPYETIRQHK NVYPACQSKC FEILEHMLEG IELDDNSLKQ TPSYGKDLEI
VYEDEAIVIV NKPAEFLSVP GKFITDSVQT RIKARYPQAT GPLIVHRLDM STSGLLVLTL
TAETNKQVQK QFIDRTVEKR YTALLEGNIA LNDGIIDLPL TGDLEDRPRQ MVDHKQGRKA
ETTFQVIERN NNQTKVYLYP KTGRTHQLRV HCAHQAGLGT PIVGDDLYGF KSNRLHLHAG
YLKFTHPITG NEVEFSVKDD F
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