| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0565 |
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| Symbol | rhlE |
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| ID | 6961968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 617633 |
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| End bp | 618961 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643381852 |
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| Product | putative ATP-dependent RNA helicase RhlE |
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| Protein accession | YP_002264890 |
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| Protein GI | 209809352 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGGCT ATTATCTTAG CTTTGAGCCC TTTATATTAA TGACCACTAT CACAACGCCT
GCCAACTTTA CAGAACTTGG CCTTATTACA CCTTTGTTAG CTCGATTAAC TGAGCTGGAA
TATCAACAGC CAACGCCAAT TCAAGCGCAA GCTATTCCAA GTGTATTGGC TGGGCGTGAC
TTAATTGCAG GGGCAAATAC AGGTTCAGGT AAAACAGCAA CGTTCGCACT GCCTATATTA
CAGCAGTTGC ATGAAGATAA GCCTTTTAGC ACTAAAAGTG GGAAAGGTAA CTATGTTACT
GGATTGATTT TAGTTCCGAC TCGTGAATTG GCAAAACAAG TTGCTGACAG TATTAAATCT
TATGCTGTGC ATTTTAACGG TGCAATTAAA ACCGTTGCTG TTTTTGGTGG CGTATCTGCA
AATACTCAAA TGCTGGCTTT ACGTGGCGGC ACTGATATTT TAGTAGCCAC ACCGGGTCGA
TTACTCGATC TTATTTCAAG TAATGCTATT AAGCTTGATA AAGTCAAAAC ATTAGTGCTT
GATGAAGCCG ATCGAATGTT AAGCCTTGGC TTTACTGAAG AGCTATCAGC GTTATTGGAT
TTATTACCAA AGCAAAAGCA GACGTTATTG TTTTCAGCGA CTTTTCCTGA ACAAGTACAA
ACATTAACTC AAGAACTGCT TAACGATCCT ATTGAAATTC AAGTGCAAAG CGCAGATGCA
AGTACTTTGG TACAGCGTGT TTTTACCGTT AATAAAGGTG AAAAAACCGC ATTGCTAGCG
CATTTGATCA AACAAAACGA ATGGCGACAA GCACTTATCT TCGTTAATGC GAAAAATAGT
TGTGAGCATT TAGCGGATAA ACTGTCTAAA CGTGGAATTA CCGCTGAAGT ATTTCATGGT
GATAAAGGCC AAGGTGCGCG TACTCGTATA CTTGAAGCAT TTAAATTGGG TGAGATTGAA
GTTTTAATTG CGACAAATAT TGCTGCTCGT GGTTTAGATA TCGAAAAACT ACCGGTTGTT
ATTAATTTTG ATTTGCCAAG AAGTCCATCA GATTATATGC ACCGTATTGG TCGAAGTGGT
CGTGCTGGGG AAGTTGGTTT AGCATTATCA CTTATCGATC ATGAAGATTA CCATCACTTT
AAAATCATCG AGAAGAAGAA CAAAATTCGA CTAGAACGTG AAGAAGTTGA AGGTTTTGAA
GTCGATGAAG CAGTAAGTGA TTCTTTATCA GACGTAGAAA AGCCGATGGC AAAACCTGAA
GGCACTGGTA AGAAAAAACG TAAAAATAGA GCATCAGCAG ATGAAGATGT TTGGTTGAGA
AATTACTAA
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| Protein sequence | MAGYYLSFEP FILMTTITTP ANFTELGLIT PLLARLTELE YQQPTPIQAQ AIPSVLAGRD
LIAGANTGSG KTATFALPIL QQLHEDKPFS TKSGKGNYVT GLILVPTREL AKQVADSIKS
YAVHFNGAIK TVAVFGGVSA NTQMLALRGG TDILVATPGR LLDLISSNAI KLDKVKTLVL
DEADRMLSLG FTEELSALLD LLPKQKQTLL FSATFPEQVQ TLTQELLNDP IEIQVQSADA
STLVQRVFTV NKGEKTALLA HLIKQNEWRQ ALIFVNAKNS CEHLADKLSK RGITAEVFHG
DKGQGARTRI LEAFKLGEIE VLIATNIAAR GLDIEKLPVV INFDLPRSPS DYMHRIGRSG
RAGEVGLALS LIDHEDYHHF KIIEKKNKIR LEREEVEGFE VDEAVSDSLS DVEKPMAKPE
GTGKKKRKNR ASADEDVWLR NY
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