Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0434 |
Symbol | |
ID | 6961868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | - |
Start bp | 491077 |
End bp | 492207 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643381728 |
Product | secretion protein, HlyD family |
Protein accession | YP_002264768 |
Protein GI | 209809230 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.554453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTTAT TGCTGATTCT TACGTATACC GCCTTATGTA TCGCGGTTTT TAAAATATTT AATATCCCTT TAAATAAATG GACCGTACCA ACGGCAGGTT TAGGTGGCGT GGTTCTTGTT GGTACACTTG TTCTTTTAAT GAACTATAAC CACCCATTCA CTCAATTTGG TGGACAGTTT TATGTCACGA CTCCAATAGT GCCAAGTGTG AAAGGCAAAG TTATTGAAGT TAATGTAGAG GCAAACCAAG CTCTAAAAGA AGGTGATGTT CTTTTCAAAA TAGATCCAAT CCCGTTTAAA GCAGAAGTTG TCCGTAAACA AGCCGCATTA AATGAAGCAC AACAAGGGGC TTTACAACTA GAGTCCATTT ATAAATCAGC TCAAGCGAAT ACAATCAAAG CAACTGCTGA CAAAGATAAA GCCTATCGTG AATTTAAACG TTATGAAAAA GGTTATAAAA AAGGTGCATT TACAGCCCAA CAACTGGATA CTCGCAAGCA GAACTATAAA GCAGCGCAAG CAACCGTTGA GTCAGTTCAA GCACAAGAAC AACAAGCAAA ATTAGCGTTA GAGTCTCAAA TTAATGGCGA AAATACGACA GTTGCTCGTA TGCGAGCAGA ACTAGAACAA GCGCAATTCA ATCTTGATGA AACAATAGTA AAAGCGCCTA CTGATGGTTA CGTAACTCAA ATGGCATTAC GTCCAGGTAT GATGGCCGTT CCCCTGCCTT TACGCCCGGT AATGACTTTT ATTCATACTG AAGCTCAATA CTATGTCGGT GCATTCCGTC AAAATTCTTT ACAGCGCTTA CAAGCGGGCT TTAAAGCTGA ATTTTTATTC CGCGCAATAC CCGGTCGAGT ATTCCAAGGA GAAGTCGTCG AAGTCATTCC AGCCATTGGG GAAGGACAAA TCCAAGCGTC TGGCTCATTA CTTGGTACGA ATGCAATTCA AACAAATGGA CGTGCATTAG TTAAATTAAA ATTAACGGAA GACGTGTCAG AATTCCATCT TCCTGTCGGT GCTAATGCTG AAATATCTGT TTATTCCGAT AGTTTTGAAC ATGTGTCTAT TATGCGTAAG GTATTAATCC GTATGAAGTC TTGGCAAAAT TATTTGTACC TTGACCACTA A
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Protein sequence | MDLLLILTYT ALCIAVFKIF NIPLNKWTVP TAGLGGVVLV GTLVLLMNYN HPFTQFGGQF YVTTPIVPSV KGKVIEVNVE ANQALKEGDV LFKIDPIPFK AEVVRKQAAL NEAQQGALQL ESIYKSAQAN TIKATADKDK AYREFKRYEK GYKKGAFTAQ QLDTRKQNYK AAQATVESVQ AQEQQAKLAL ESQINGENTT VARMRAELEQ AQFNLDETIV KAPTDGYVTQ MALRPGMMAV PLPLRPVMTF IHTEAQYYVG AFRQNSLQRL QAGFKAEFLF RAIPGRVFQG EVVEVIPAIG EGQIQASGSL LGTNAIQTNG RALVKLKLTE DVSEFHLPVG ANAEISVYSD SFEHVSIMRK VLIRMKSWQN YLYLDH
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