Gene VSAL_II0434 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_II0434 
Symbol 
ID6961868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011313 
Strand
Start bp491077 
End bp492207 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content40% 
IMG OID643381728 
Productsecretion protein, HlyD family 
Protein accessionYP_002264768 
Protein GI209809230 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.554453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAT TGCTGATTCT TACGTATACC GCCTTATGTA TCGCGGTTTT TAAAATATTT 
AATATCCCTT TAAATAAATG GACCGTACCA ACGGCAGGTT TAGGTGGCGT GGTTCTTGTT
GGTACACTTG TTCTTTTAAT GAACTATAAC CACCCATTCA CTCAATTTGG TGGACAGTTT
TATGTCACGA CTCCAATAGT GCCAAGTGTG AAAGGCAAAG TTATTGAAGT TAATGTAGAG
GCAAACCAAG CTCTAAAAGA AGGTGATGTT CTTTTCAAAA TAGATCCAAT CCCGTTTAAA
GCAGAAGTTG TCCGTAAACA AGCCGCATTA AATGAAGCAC AACAAGGGGC TTTACAACTA
GAGTCCATTT ATAAATCAGC TCAAGCGAAT ACAATCAAAG CAACTGCTGA CAAAGATAAA
GCCTATCGTG AATTTAAACG TTATGAAAAA GGTTATAAAA AAGGTGCATT TACAGCCCAA
CAACTGGATA CTCGCAAGCA GAACTATAAA GCAGCGCAAG CAACCGTTGA GTCAGTTCAA
GCACAAGAAC AACAAGCAAA ATTAGCGTTA GAGTCTCAAA TTAATGGCGA AAATACGACA
GTTGCTCGTA TGCGAGCAGA ACTAGAACAA GCGCAATTCA ATCTTGATGA AACAATAGTA
AAAGCGCCTA CTGATGGTTA CGTAACTCAA ATGGCATTAC GTCCAGGTAT GATGGCCGTT
CCCCTGCCTT TACGCCCGGT AATGACTTTT ATTCATACTG AAGCTCAATA CTATGTCGGT
GCATTCCGTC AAAATTCTTT ACAGCGCTTA CAAGCGGGCT TTAAAGCTGA ATTTTTATTC
CGCGCAATAC CCGGTCGAGT ATTCCAAGGA GAAGTCGTCG AAGTCATTCC AGCCATTGGG
GAAGGACAAA TCCAAGCGTC TGGCTCATTA CTTGGTACGA ATGCAATTCA AACAAATGGA
CGTGCATTAG TTAAATTAAA ATTAACGGAA GACGTGTCAG AATTCCATCT TCCTGTCGGT
GCTAATGCTG AAATATCTGT TTATTCCGAT AGTTTTGAAC ATGTGTCTAT TATGCGTAAG
GTATTAATCC GTATGAAGTC TTGGCAAAAT TATTTGTACC TTGACCACTA A
 
Protein sequence
MDLLLILTYT ALCIAVFKIF NIPLNKWTVP TAGLGGVVLV GTLVLLMNYN HPFTQFGGQF 
YVTTPIVPSV KGKVIEVNVE ANQALKEGDV LFKIDPIPFK AEVVRKQAAL NEAQQGALQL
ESIYKSAQAN TIKATADKDK AYREFKRYEK GYKKGAFTAQ QLDTRKQNYK AAQATVESVQ
AQEQQAKLAL ESQINGENTT VARMRAELEQ AQFNLDETIV KAPTDGYVTQ MALRPGMMAV
PLPLRPVMTF IHTEAQYYVG AFRQNSLQRL QAGFKAEFLF RAIPGRVFQG EVVEVIPAIG
EGQIQASGSL LGTNAIQTNG RALVKLKLTE DVSEFHLPVG ANAEISVYSD SFEHVSIMRK
VLIRMKSWQN YLYLDH