Gene VSAL_II0225 details

Gene Information

• Locus tag: VSAL_II0225
• Symbol: soxR
• ID: 6961692
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: +
• Start bp: 248666
• End bp: 249112
• Gene Length: 447 bp
• Protein Length: 148 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643381535
• Product: redox-sensitive transcriptional activator SoxR
• Protein accession: YP_002264577
• Protein GI: 209809039
• COG category: [K] Transcription
• COG ID: [COG0789] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR01950] redox-sensitive transcriptional activator SoxR

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAAATG AAAAAACATT GCTGACGATC GGCATGCTTT CAGAGCGAAG TGGTGTTGCC 
GATTCTGCAT TGCGATTCTA TGAAACTAAA AATCTCATTG CCTCTATCCG AACGGCAGGA 
AATCAGCGCC GTTTTCATCC GTCAATGTTA AGGCGCATTG CGCTTATTCA AGTGGCTCAG 
CTTGTTGGTT TTACGCTAGA AGAAATAACG AAAGAGTTAG CTGACTTACC CATGAAGGAA 
ACGGCGACAA GACGTGATTG GGAAAAGGTC GCAAAGAAAT GGCAAAAAGA TCTCGATAAA 
AAAATTGAAC AAATCCAGTC TCTTAAAGAA AACTTAACCG GATGTATTGG CTGTGGTTGT 
TTGAGTATGG ATAGATGTCA GTTATTAAAC CCTGATGATA TTTTGCATGA AGAGGGCAAT 
GGTGCTCAAC GCTTGTTATT AAAATAA 

 

Protein sequence

MLNEKTLLTI GMLSERSGVA DSALRFYETK NLIASIRTAG NQRRFHPSML RRIALIQVAQ 
LVGFTLEEIT KELADLPMKE TATRRDWEKV AKKWQKDLDK KIEQIQSLKE NLTGCIGCGC 
LSMDRCQLLN PDDILHEEGN GAQRLLLK