| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0142 |
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| Symbol | rhlE |
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| ID | 6961620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 163541 |
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| End bp | 165028 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643381462 |
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| Product | putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) |
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| Protein accession | YP_002264504 |
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| Protein GI | 209808966 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTTTTA CCTCTCTGGG CTTATCTGCC CCTATTTTAA AAGCTGTAGA AGCTCAAGGT
TACAGCACGC CTTCACCAAT CCAATTACAA GCGATTCCAG CGGTAATTGA AGGGAAGGAC
GTTATGGCGG CGGCTCAAAC AGGAACAGGT AAAACAGCAG GCTTTACACT TCCTCTTCTT
GAGCGTTTAT CAAAAGGTCA AAAACTTAAG TTTAACCAAG TTCGTGCATT AATCTTAACA
CCAACTCGTG AGCTTGCAGC GCAAGTGCAT GAAAGTGTTG AAAAATACAG TGTGAATCTT
CCACTAACTT CTGATGTCGT ATTTGGTGGC GTTAAAGCAA ACCCACAAAT GCAACGCCTT
CGTAAAGGTG TTGATGTATT GGTTGCAACC CCTGGCCGTT TGTTGGATCT TGCGAATCAA
AATGCAATTA AATTCGATCA ACTGGAAATT CTAGTTTTGG ATGAAGCTGA CCGTATGTTA
GATATGGGCT TTATTCACGA CATTAAAAAG ATCTTAAATA AATTACCTAA GAACCGTCAA
AATCTACTTT TCTCTGCGAC GTTCTCTGAT GAGATCCGTC AGTTAGCAAA AGGGCTTGTA
AATAACCCCG TTGAGATTTC AGTAGCAACG CGTAACACAA CGGCAGAAAC GGTTGAACAA
TCAGTTTACG TTGTTGATAA AACGAAAAAA GCGCGTGTTC TTACTAAGCT AATTAAAGAC
AATGACTGGA AACAAGTATT GGTTTTCAGC AAAACTAAAC ATGGTGCAAA CCGTTTAGCG
AAGACTCTTG AAGAGAAAGG CATTAGCTCT GCGGCTATCC ATGGCAATAA GAGCCAAGGT
GCACGTACGA AAGCATTAGC TAACTTCAAG AGCGGTCAAG TTCGTGTATT AGTAGCGACA
GACATTGCTG CTCGTGGTTT GGATATCGAG CAATTACCAC AAGTTATCAA CGTTGACTTA
CCAAAAGTGC CTGAAGATTA CGTTCACCGT ATTGGCCGTA CTGGTCGTGC TGGCGCAACG
GGTAAAGCAA TCTCTTTTGT GAGTGAAGAT GAAGCAAGTG AATTGTTCGC GATTGAGCGT
CTAATTCAAA AAATCTTACC TCGTCATACA TTAGAAGGTT TTGAACCTGA AATGAAAGTG
CCTGAGTCAA GATTAGATTC TCGTCCTATC AAAGCAAAGA AACCAAAGAA AACACATGCA
CCACGTGTAG AGCATAAAGA TGGTCAACGT TCAGGTGAAA ACCGCAGTGG TCATAAGCAA
GGCGCGAAAC CGGCTCCAAG ACGTAACACT GAGAATAAAG ACGGTGCTGC TAAGAAAGAA
GGCGGTAATG CTAAGAAACG TCCTACTGAT GGTGGTAAAC CTAGATCGAA AGGCAATGGT
GAAAACCGCG GTAATGGCAG TAACTTTGGT AGTGGTAAAC CAAAATCAGA TGCGACAAAA
CCACGTCGCC AAGGCCCACG TCCAGCGCGT AAGCCAGTAG CTCAATAA
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| Protein sequence | MGFTSLGLSA PILKAVEAQG YSTPSPIQLQ AIPAVIEGKD VMAAAQTGTG KTAGFTLPLL
ERLSKGQKLK FNQVRALILT PTRELAAQVH ESVEKYSVNL PLTSDVVFGG VKANPQMQRL
RKGVDVLVAT PGRLLDLANQ NAIKFDQLEI LVLDEADRML DMGFIHDIKK ILNKLPKNRQ
NLLFSATFSD EIRQLAKGLV NNPVEISVAT RNTTAETVEQ SVYVVDKTKK ARVLTKLIKD
NDWKQVLVFS KTKHGANRLA KTLEEKGISS AAIHGNKSQG ARTKALANFK SGQVRVLVAT
DIAARGLDIE QLPQVINVDL PKVPEDYVHR IGRTGRAGAT GKAISFVSED EASELFAIER
LIQKILPRHT LEGFEPEMKV PESRLDSRPI KAKKPKKTHA PRVEHKDGQR SGENRSGHKQ
GAKPAPRRNT ENKDGAAKKE GGNAKKRPTD GGKPRSKGNG ENRGNGSNFG SGKPKSDATK
PRRQGPRPAR KPVAQ
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