Gene VSAL_II0021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_II0021 
SymbolpdxH 
ID6961514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011313 
Strand+ 
Start bp31164 
End bp31799 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content43% 
IMG OID643381354 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_002264400 
Protein GI209808862 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.479852 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATTAG AAGATATTCG TCGTGATTAT AGTCTTGGTG GTTTGCGTAG AGCTGACTTA 
CCACAAGCGC CTATTGAGTT GTTTGAACTA TGGTTAAAAC AAGCGGTAGA AGCAAAACTG 
ACGGATCCAA CTGCTATGAC AGTGGCAACC GTTGATAAGA AGGGGCAACC ATTTCAGCGT 
ATTGTTTTAC TAAAGCATTT TGATAGCACT GGATTCGTTT TTTATACCAA TCTTGCTTCT 
CGAAAAGCAC AACACCTCGA AGATAACAGC AAAATTTCAT TGCATTTTCC TTGGCATCCT 
CTTGAGCGCC AAGTGCATAT TACAGGTACG GCTGAAAAAC TGACGGCGCT AGAAAACATG 
AAGTATTTCA CGTCAAGACC GAAAGAAAGT CAGATTGCGG CGTGGGCAAG TAAGCAAAGC 
AGTCGCTTGA CCGCGAGAGC GGCGCTAGAA GGAAAATATC TAGAACTGAA GCAACAATTT 
TCGAAAGGTG AGATCCCTGT ACCTAAATTC TGGGGCGGGT TTAGAGTCAA GATTGATTCT 
ATTGAATTTT GGCAAGGCGG TGATAGCCGT CTGCATGACC GCTTTCTATA CAGCAAAGAT 
CAAGATAAGT GGGTGATCGA TCGATTAGCG CCATGA
 
Protein sequence
MELEDIRRDY SLGGLRRADL PQAPIELFEL WLKQAVEAKL TDPTAMTVAT VDKKGQPFQR 
IVLLKHFDST GFVFYTNLAS RKAQHLEDNS KISLHFPWHP LERQVHITGT AEKLTALENM 
KYFTSRPKES QIAAWASKQS SRLTARAALE GKYLELKQQF SKGEIPVPKF WGGFRVKIDS 
IEFWQGGDSR LHDRFLYSKD QDKWVIDRLA P