Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0018 |
Symbol | |
ID | 6961511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | - |
Start bp | 19931 |
End bp | 20536 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 643381351 |
Product | outer membrane protein OmpA family |
Protein accession | YP_002264397 |
Protein GI | 209808859 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAAAT TAATTTACCC AACCCTTATT ACGAGTCTTT TTTTGACGGC ATGTGTCTCT GGCGACAAGG ATTATATTGA AACACCCGCT CCCTCTCAGA TCGCAGACCT ACGAGATAAT GATAACGATG GCGTTATTAA CGCTCGAGAT ATCTGCCCAG GAACACCAAG AGGCGCTCAA ATTGATAATG ATGGTTGTGC CGAATACGTA GAGCAATCAG ATAAAAAAGA TTTAAAGATT CTTTTTGCTA ACAATTCATC AGAAATATCA CCTATTTTCA AAAGTGAAAT AAGAACAATG GCTGAATTTC TGGCTGAATA TCCAGAAACT TCAATTCAAC TTCAAGGTTT TGCAAGTCAA CAAGGTAATG CAGAATACAA CATTCGCTTA TCTGAACTTA GAGCATCTGC AGTACGTGTT GCTTTGATTA ATTATGGTGT TAATCCGGAC AAAATTGAAA CGATAGGTTT TGGTGATACC TTATTAACAG CTAAAGGGGA TTCAGCAGTT AGTCACGCTT TAAATCGTCG AGTGGTTGCA ACGGTTGTTG GTTTCAAAGG TGATGTAGTC GACGAATGGA ATATATTTAC ACGTAAAAAG AAATAA
|
Protein sequence | MKKLIYPTLI TSLFLTACVS GDKDYIETPA PSQIADLRDN DNDGVINARD ICPGTPRGAQ IDNDGCAEYV EQSDKKDLKI LFANNSSEIS PIFKSEIRTM AEFLAEYPET SIQLQGFASQ QGNAEYNIRL SELRASAVRV ALINYGVNPD KIETIGFGDT LLTAKGDSAV SHALNRRVVA TVVGFKGDVV DEWNIFTRKK K
|
| |