Gene VSAL_I3013 details

Gene Information

• Locus tag: VSAL_I3013
• Symbol: neuC
• ID: 6988890
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 3263835
• End bp: 3265001
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 643381291
• Product: polysialic acid biosynthesis protein P7
• Protein accession: YP_002264337
• Protein GI: 209696406
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0381] UDP-N-acetylglucosamine 2-epimerase
• TIGRFAM ID: [TIGR03568] UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAGAC TACTTTATAT CACAGGCTCT AGAGCTGAAT ACGGCATTAT GAAGCGACTA 
TTACTGGCAC TAAAAGATGA CAGTGAGATT GAATTAACCA TAGTTGCTAC TGGTATGCAC 
TGCGACGAGA AATATGGCTT AACTTATCAA GTAATCGAAA ATGATGGGTT TGTTATTGAT 
AAGTTGATTG ATATTCATAT CAACACTGAA AATAACGCCA ATATTTTAGC TTCAATGTCT 
ATCTGTCAGG CTGAATTTGG TCAGTATTTT CAAGACAATA AATTTGATGC TGTAATGATA 
TTAGGTGATC GCTATGAGAT ATTCTCTGTT GCGATAGCTG TAGCTATGCA TAACTTACCT 
ATCATTCATT TACACGGTGG TGAGAAAACA TTGGGCAATT ATGATGAGTT TATACGTCAT 
GCTATTACCA AAATGAGTAA ATTGCATTTA GCTTCTACAG AAGAGTATCG TCAGCGTATT 
ATTCAAATGG GCGAGCATCC TGATAGTGTA TTTAACATTG GTGCATTAGG GGCAGAAAAC 
AGCCTACTAA TGGATTTACC GACAAAACAG ATGTTAGAAA ATCGTTTTGG ATCACTGCAA 
AATCCTTATT TTATGGTGGT ATTCCATCCT GAAACCTTAA CGGACACACC GCTTGCTGAA 
CAGATGAACG CATTACTCTT GGCGCTTAAA ACATTAACAC TAAAGTACGA CCTTATTTTT 
ATTGGTTCAA ACTCAGACAC CGGTGCTGAT GAAATTACAG TTAAAGTTAA GGCGTTCTGC 
GATGAGACGA ACTCTCGCTA TATGACGTCT GTTAAGCCTG AAGAATATTT AGCACTAAAT 
AAGTATGCAC AAGGCCTAAT TGGCAACTCA TCATCTGGTT TAATCGAAGT GCCTTCATTA 
AAAGTGCCGA CGATTAATAT CGGAGAACGG CAGAAAGGTC GCGTACGAGG TGACACGGTC 
ATTGATTGTG AATGTACAGC TGAGGCTATT TTAGCTTCGG TTACGGATAG CCAGTCGGTA 
GTATTTCAAC ATACAGTACA GAAGGCTGCT AATCCATATT ATCAACAAGC AGTATTAGAA 
AATGCTTTGA CTGAAATTAA ACAGTTTATG CAGTCATCAG TACCATTATG TAAAGATTTT 
TACGATCTAA ACATAAATAA TCAGTGA 

 

Protein sequence

MKRLLYITGS RAEYGIMKRL LLALKDDSEI ELTIVATGMH CDEKYGLTYQ VIENDGFVID 
KLIDIHINTE NNANILASMS ICQAEFGQYF QDNKFDAVMI LGDRYEIFSV AIAVAMHNLP 
IIHLHGGEKT LGNYDEFIRH AITKMSKLHL ASTEEYRQRI IQMGEHPDSV FNIGALGAEN 
SLLMDLPTKQ MLENRFGSLQ NPYFMVVFHP ETLTDTPLAE QMNALLLALK TLTLKYDLIF 
IGSNSDTGAD EITVKVKAFC DETNSRYMTS VKPEEYLALN KYAQGLIGNS SSGLIEVPSL 
KVPTINIGER QKGRVRGDTV IDCECTAEAI LASVTDSQSV VFQHTVQKAA NPYYQQAVLE 
NALTEIKQFM QSSVPLCKDF YDLNINNQ