Gene VSAL_I2983 details

Gene Information

• Locus tag: VSAL_I2983
• Symbol: thiC
• ID: 6988200
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 3230776
• End bp: 3232722
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643381260
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_002264308
• Protein GI: 209696377
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGTCAA GTCGTAAACA AGCGCGTTTG GATGCTAAAT CAAACATTGA GTCGCTTTCT 
GTTCAACCTT ATCCCAATTC AAAAAAAATC TATATCGACG GTTCTCGTCC TGATATTCGT 
GTTCCAATGC GTGAAATTTC ATTGGCTGAT AGCTTAGTCG GTGGAACAAA AGAAAACCCA 
ACGCTGATAC CAAACGAACC CATACAAGTC TATGACACCT CAGGGGTCTA TACCGACCCA 
AATTACGACA TTGATGTTTA CCAAGGGTTG CCTAAATTAC GCGAACGTTG GATAGAAGAC 
CGCACTGATA CTGAAATGTT GAAAGGGGTA AGCTCTGTTT ATTCTCAAGA GCGCTTATCT 
GATGAAACGC TTGATGAGCT TCGTTATGGC AATCTACCAA CAATTCGTCG AGCGAAAAAA 
GGACAATGTG TTACCCAACT TCATTATGCT CGCCAAGGTA TTATTACCCC AGAAATGGAA 
TACATCGCGA TCCGTGAAAA CATGGGACGT CAAAAATTTG CAGATGAACA ACTAAATCAT 
CAGCATCCTG GACACAGTTT TGGTGCTAAC CTTCCAAAAG AAATTACCCC TGAATTTGTA 
CGTAACGAAG TCGCCGAAGG GCGAGCCATT ATTCCTGCCA ATATTAATCA TCCAGAAGCA 
GAGCCAATGA TCATTGGTCG TAATTTTTTA ATTAAAGTTA ATGCCAATAT TGGTAATTCT 
TCGGTCAGTT CGTCGATTGA AGAAGAAGTA GAGAAACTGG TTTGGTCTAC GCGTTGGGGC 
GGCGATACGG TGATGGACTT ATCGACGGGT CGTAATATTC ACGAAACACG TGAATGGATC 
CTTCGTAATA GTCCAGTACC AATCGGCACG GTTCCGATGT ACCAAGCACT AGAGAAAGTG 
AATGGCGTGG CTGAGAATCT AAACTGGGAA GTAATGCGAG ATACCTTAAT TGAGCAAGCA 
GAGCAGGGTG TAGATTACTT TACGATTCAT GCCGGTTTAC TGCTTCGTTA TGTACCAATG 
ACGGCGAAAC GAGTGACAGG GATTGTTTCT CGTGGCGGTT CTATCATTGC AAAATGGTGT 
TTAGCGCATC ATCAAGAAAG TTTCTTATAT ACGCATTTTC GTGAAATTTG TGAGATTTGT 
GCAAAGTACG ATGTTTCTCT TTCTTTAGGG GATGGTTTAC GTCCTGGCTC AATTGCGGAT 
GCGAATGATG AAGCACAGTT TGCTGAATTG AGAACGCTCG GTGAGTTAAC TAAAGTTGCT 
TGGGAATACG ATGTTCAAGT GATTATTGAG GGGCCGGGTC ATGTACCAAT GCATATGATC 
AAAGAGAACA TGGACGAGCA ACTCAAGCAT TGTCATGAAG CACCGTTCTA TACATTAGGT 
CCATTAACGA CTGATATTGC CCCTGGTTAT GATCACATTA CTTCGGGGAT TGGTGCGGCC 
ATGATTGGAT GGTATGGCTG TGCAATGCTT TGTTATGTCA CACCGAAAGA ACATTTAGGC 
CTACCAAATA AAGAAGACGT TAAGATTGGT TTGATCACCT ATAAATTAGC CGCTCATGCG 
GGTGATTTAG CCAAAGGTCA TCCGGGTGCC CAAATTCGAG ATAACGCCTT ATCAAAAGCC 
CGTTTTGAAT TTCGTTGGGA AGACCAGTTT AATCTGTCAC TTGATCCGAT TACCGCTCGT 
GAATTTCATG ATGAAACACT GCCTCAAGAG TCGGGCAAGG TTGCTCACTT TTGTTCAATG 
TGCGGGCCTA AATTCTGCTC AATGAAAATA TCACAAGAAG TTCGAGAGTA TGCCAAAGAC 
ACAGAACAAG TGGCGTTAGA CCAAGCGATT AATATCAAAA TGCTCGATGA CCCACTTGAA 
GGTATGCGCC AAAAATCAGC AGAGTTTAAG GCCTCTGGTT CTGAGTTGTA CCATCCTGCT 
GTAGATGCAG AACCCGTGAA AAGCTAA 

 

Protein sequence

MSSSRKQARL DAKSNIESLS VQPYPNSKKI YIDGSRPDIR VPMREISLAD SLVGGTKENP 
TLIPNEPIQV YDTSGVYTDP NYDIDVYQGL PKLRERWIED RTDTEMLKGV SSVYSQERLS 
DETLDELRYG NLPTIRRAKK GQCVTQLHYA RQGIITPEME YIAIRENMGR QKFADEQLNH 
QHPGHSFGAN LPKEITPEFV RNEVAEGRAI IPANINHPEA EPMIIGRNFL IKVNANIGNS 
SVSSSIEEEV EKLVWSTRWG GDTVMDLSTG RNIHETREWI LRNSPVPIGT VPMYQALEKV 
NGVAENLNWE VMRDTLIEQA EQGVDYFTIH AGLLLRYVPM TAKRVTGIVS RGGSIIAKWC 
LAHHQESFLY THFREICEIC AKYDVSLSLG DGLRPGSIAD ANDEAQFAEL RTLGELTKVA 
WEYDVQVIIE GPGHVPMHMI KENMDEQLKH CHEAPFYTLG PLTTDIAPGY DHITSGIGAA 
MIGWYGCAML CYVTPKEHLG LPNKEDVKIG LITYKLAAHA GDLAKGHPGA QIRDNALSKA 
RFEFRWEDQF NLSLDPITAR EFHDETLPQE SGKVAHFCSM CGPKFCSMKI SQEVREYAKD 
TEQVALDQAI NIKMLDDPLE GMRQKSAEFK ASGSELYHPA VDAEPVKS