| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2924 |
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| Symbol | epsD |
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| ID | 6988447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3166415 |
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| End bp | 3168442 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643381203 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002264253 |
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| Protein GI | 209696322 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAAGG GAGCCTTATT ACTGGCGAGT AGCATGGTGT GGACATCAGC TATCGCCAAT
GACTTTAGTG CCAGTTTTAA AGGGACGGAT ATTCAAGAGT TCATCAACAT TGTTGGTCGA
AATTTGGAAA AAACCATTAT TGTTGATCCT TCAGTACGCG GAAAAGTGGA TGTTCGTAGC
TACGATTTAT TGAATGAAGA ACAATATTAT CAATTCTTTT TAAGTGTCCT TGAAGTCTAT
GGCTACGCGG TCGTTGAAAT GGATTCTGGT ATTTTAAAAG TCATTAAAGA TAAAGATGCG
AAAACGTCGG CAGTTCCTGT TCTGGGAGCA AAAGATAACA TAACGGGTGA TGCGGTAATT
ACTCGTGTTA TTGCGGTTCG TAATGTCTCT GTACGTGAGC TTTCACCTTT ATTACGTCAG
CTGAATGATA ATGCGGGCGC GGGTAATGTG GTTCATTACG ATCCGGCGAA CATTATTATG
ATCACGGGTC GTGCGGCGGT GGTTAATCGC CTTGCTGAGA TTATTGAACG AGTCGATCAG
GCGGGTGATA AAGAAGTTGA AGTGGTTGAG CTTAAAAATG CATCGGCGGC CGAGATGGTT
CGTATTGTTG ATGCTTTGAA TAAAACAACG GAAGCAAAAA ACACTCCGGC TTTCTTACAA
CCAAAATTGG TTGCCGATGA GCGAACTAAC TCAGTATTAA TTTCTGGGGA TCCTAAAGTT
CGCCAACGAT TGAAAAAATT AATTAAGCAA CTTGATGTAG AAATGGCAAC GAAAGGCAAT
AACCAAGTGG TTTACTTACG CTATGCCAAA GCAGAAGATT TAGTTGATGT GCTTAAAGGG
GTTTCTGACA ATCTAGAAGC CGGTAAAGGA AGTGGCAAGC AATCGGGTTC AAGTAATCGT
GGTAATGTCA TGATTTCAGC TCATGCGGAT ACTAATGCGA TCATTATCAC TGCACCGCCA
GATATTATGC GTGCAGTGAA AGATGTGATT GCTCAATTAG ATATCCGTCG TGCTCAAGTA
TTAATTGAAG CGCTGATAGT CGAAATGGCG GAAGGTGATG GCGTTAATCT TGGTGTGCAA
TGGGGTAATT TAAAAACCGG TGCAATGATC CAATACAGCA ATACGGGGGC CTCAATTGGC
GGCACCATGG TGGGCTTAGA AGAAGCTAAA GACAGCACCA CGACAACCGC TGTTTATGAT
AGCGATGATA ATTTCCAAAG AAATGAAACC ACAACAGAAG AGGGTGATTA CGGTGCACTT
GCTTCTGCGC TTGGTGGTGT TCAAGGCGCG GCGGTTAGTA TTATGATGGG GGATTGGACT
GCGTTGATAA CGGCGGTATC GACTGATTCG AATTCAAATA TTCTGTCATC ACCAAGTATT
ACTGTCATGG ATAATGGTGA AGCGTCATTT ATTGTCGGTG AAGAAGTTCC TGTATTAACA
GGGTCTACCT CTGGTTCAAA TAACGAGAAC CCATTCCAAA CCGTTGAACG TAAAGAAGTG
GGTATTAAGC TTAAGGTGGT CCCTCAGATT AATGAAGGGA ACTCGGTTCG TTTGGATATT
GAACAAGAAG TGTCTAATGT ATTGGGTGCG AATGGGGCGG TTGATGTTCG TTTTGCTAAG
CGCCAGTTAA GTACGTCGGT CATGGTAGAA GATGGCAAAA TGTTAGTACT GGGTGGTTTG
ATTGATGAAC GAGCGATGGA AAGTGAATCA AAAGTTCCAT TCCTTGGTGA TATTCCGATT
TTAGGCTATT TATTCAAATC AACCAGCACT CAAGTTGAAA AGAAAAATTT AATGATATTC
ATTAAACCAA CCATTATTCG TGATGGCATG ACATCGGATG GTATTACTCA GCGTAAATAC
AATTATATTC GTGCAGAGCA ACTATATAAT GCACAGAAAG GCTTGAAGTT TATGGATGAT
ACGAATATTC CGGTGTTACC AACATTTGAT GAAGGCATAA AACACCCCGC TGAAATTCAA
GCGTTCTTTG AACAGTTTGA TGATGAACAT AAGGATAAGG GAAAATAA
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| Protein sequence | MGKGALLLAS SMVWTSAIAN DFSASFKGTD IQEFINIVGR NLEKTIIVDP SVRGKVDVRS
YDLLNEEQYY QFFLSVLEVY GYAVVEMDSG ILKVIKDKDA KTSAVPVLGA KDNITGDAVI
TRVIAVRNVS VRELSPLLRQ LNDNAGAGNV VHYDPANIIM ITGRAAVVNR LAEIIERVDQ
AGDKEVEVVE LKNASAAEMV RIVDALNKTT EAKNTPAFLQ PKLVADERTN SVLISGDPKV
RQRLKKLIKQ LDVEMATKGN NQVVYLRYAK AEDLVDVLKG VSDNLEAGKG SGKQSGSSNR
GNVMISAHAD TNAIIITAPP DIMRAVKDVI AQLDIRRAQV LIEALIVEMA EGDGVNLGVQ
WGNLKTGAMI QYSNTGASIG GTMVGLEEAK DSTTTTAVYD SDDNFQRNET TTEEGDYGAL
ASALGGVQGA AVSIMMGDWT ALITAVSTDS NSNILSSPSI TVMDNGEASF IVGEEVPVLT
GSTSGSNNEN PFQTVERKEV GIKLKVVPQI NEGNSVRLDI EQEVSNVLGA NGAVDVRFAK
RQLSTSVMVE DGKMLVLGGL IDERAMESES KVPFLGDIPI LGYLFKSTST QVEKKNLMIF
IKPTIIRDGM TSDGITQRKY NYIRAEQLYN AQKGLKFMDD TNIPVLPTFD EGIKHPAEIQ
AFFEQFDDEH KDKGK
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