| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2898 |
|---|
| Symbol | |
|---|
| ID | 6987965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 3144389 |
|---|
| End bp | 3145228 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643381178 |
|---|
| Product | integral membrane protein |
|---|
| Protein accession | YP_002264228 |
|---|
| Protein GI | 209696297 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.345638 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCGAT TGATCGCGTT ATCAAATCCA AGAGCTGGTC AGGCCTTTAT TGATTATATG
GCTTCACGTC ATATTGATCT TCGTATGATG CCAGAAGGGG AAGGCCAGTT TGCGTTATGG
GTAGTGTCTG ATGATACTTA TCTATTGGAA GTTGAATCGG AACTACAAGC GTTTTTAAAA
GATCCTAATG CGACAAAATA TCAATCAGCA TCATGGGATA TGGCGGATAC TCGTACTGCT
AAATTTTCTT ATTCTTCACC CAATATTATG AAGATGGTAA AAGCCAAAGC CGGTGTGTTT
ACGTTATTCA TCATGGTGAG CTGTATTGTT ATTTTTGCTT TGCAGCAATT TGGTTGGAAT
AATTCAGTCT TTCAATTATT GCACTTCCCT GAAAACCAAG GGCAAAGCAT TGAGATATGG
CGTTGGTTCT CTCATGCGTT ACTTCACTTT TCAGCTACTC ACATTATTTT TAATTTATTG
TGGTGGTGGC AGCTTGGTGG AGACATTGAA TTACGTTTAG GTCGAACAAA ACTGGTTCAA
TTGTTCTTGT TTTCTGCTTT ATTTTCAGGA CTTGGACAGT TTTGGATAGA TGGTGCTAAC
TTTGGTGGTC TATCTGGTGT TGTGTATGCG TTATTAGGCT ATTCGTGGTT TATTGGTTGG
TTGGCTCCTG AAAGAGGTAT CTCAGTGTCT AAACCTATCG TAGGGTTTAT GCTGATATGG
ATCATTCTTG GGTATGTTCA GCCTTTTATG GCGATTGCGA ATACTGCACA TTTAGTGGGA
TTGATAACCG GTTGTGCTTT TGCAGCAATT GACAGTCAAT TCAAGTTTAA AAAAGCGTAA
|
|---|
| Protein sequence | MHRLIALSNP RAGQAFIDYM ASRHIDLRMM PEGEGQFALW VVSDDTYLLE VESELQAFLK
DPNATKYQSA SWDMADTRTA KFSYSSPNIM KMVKAKAGVF TLFIMVSCIV IFALQQFGWN
NSVFQLLHFP ENQGQSIEIW RWFSHALLHF SATHIIFNLL WWWQLGGDIE LRLGRTKLVQ
LFLFSALFSG LGQFWIDGAN FGGLSGVVYA LLGYSWFIGW LAPERGISVS KPIVGFMLIW
IILGYVQPFM AIANTAHLVG LITGCAFAAI DSQFKFKKA
|
|---|
| |