Gene VSAL_I2887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I2887 
SymboltrmA 
ID6988198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp3132667 
End bp3133773 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content37% 
IMG OID643381167 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_002264217 
Protein GI209696286 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0121493 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACAAC CCGTCATGAA CCCAGAAAAT TATCAAGTAC AGTTAGATGA GAAAACAGAA 
GCACTGTCTG CTATGTTTTC TGAATTTGAC GTTCCAGAAC TGGAAGTCTT TTCTTCTCCT
GCTGAAAACT ACCGTATGCG TGCAGAGTTT CGAATTTGGC ACGAAGGTGA CGATATGTAT
TACGTCATGT TCGATCAAAA AACAAAAGAA AAGTACCGTG TAGATTACTT CTTACCCGCC
ACTCGTCTTA TTAACGACTT GATGCCACTA CTTGCAGAAG CAATAAAAGG AAGTAAAACA
CTGCGTTATA AGATGTTCCA AGTGGATTTT TTATCAACAT TAAGCGGTGA AATCTTAGTT
TCGATGCTTT ATCACCGTCA ATTAGACGAT GCTTGGAAAG AAGAAGCCGC AGTATTAAAA
CAACAATTAA ACGAGAAAGG TTTTAACCTA AATCTTATCG GCCGTGCTCG TAAAATGAAA
ATCGTTTTAG ACCAAGAATT TGTCATTGAA AAACTAAAAG TAAATGATGA CATCCTGACT
TATAAACAAG TAGAAAATAG TTTTACCCAA CCAAACGGTG TTGTAGCTCA AAAAATGTTG
GAATGGGCCG TTGATTGTAC GCAAGACAGC CAAGGCGACT TATTGGAACT TTATTGTGGT
AATGGTAATT TTTCATTAGC ATTAGCAAAA AACTTTGATC GCGTATTAGC AACCGAACTT
GCAAAGCCAT CCGTAGAATC TGCTCAATAT AATATTGCAG CCAATAATAT AGACAATGTA
CAAATTGTTC GTATGTCGGC AGAAGACTTT ACAGATGCAA TGGAAGGAAA GCGTGAATTC
CGACGTTTGA AAGATCAAAA TGTAGATTTA AAAAGCTATA ACTGCAATAC CATCTTTGTC
GATCCACCAC GTTCTGGCAT GGACGAAGGC ACTTGTAAGA TGGTACAAGG CTATGAGCGT
ATTATGTACA TTTCTTGTAA TCCTGACACT CTAAAAGAGA ACCTTGCTAT TTTAAGTAAA
ACACACAACA TTACTCGTTT TGCTTTATTT GATCAGTTCC CATATACCCA CCATATGGAA
GCCGGCATAT TCTTAGAGCG CAAATAA
 
Protein sequence
MTQPVMNPEN YQVQLDEKTE ALSAMFSEFD VPELEVFSSP AENYRMRAEF RIWHEGDDMY 
YVMFDQKTKE KYRVDYFLPA TRLINDLMPL LAEAIKGSKT LRYKMFQVDF LSTLSGEILV
SMLYHRQLDD AWKEEAAVLK QQLNEKGFNL NLIGRARKMK IVLDQEFVIE KLKVNDDILT
YKQVENSFTQ PNGVVAQKML EWAVDCTQDS QGDLLELYCG NGNFSLALAK NFDRVLATEL
AKPSVESAQY NIAANNIDNV QIVRMSAEDF TDAMEGKREF RRLKDQNVDL KSYNCNTIFV
DPPRSGMDEG TCKMVQGYER IMYISCNPDT LKENLAILSK THNITRFALF DQFPYTHHME
AGIFLERK