Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2887 |
Symbol | trmA |
ID | 6988198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 3132667 |
End bp | 3133773 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 643381167 |
Product | tRNA (uracil-5-)-methyltransferase |
Protein accession | YP_002264217 |
Protein GI | 209696286 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0121493 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACAAC CCGTCATGAA CCCAGAAAAT TATCAAGTAC AGTTAGATGA GAAAACAGAA GCACTGTCTG CTATGTTTTC TGAATTTGAC GTTCCAGAAC TGGAAGTCTT TTCTTCTCCT GCTGAAAACT ACCGTATGCG TGCAGAGTTT CGAATTTGGC ACGAAGGTGA CGATATGTAT TACGTCATGT TCGATCAAAA AACAAAAGAA AAGTACCGTG TAGATTACTT CTTACCCGCC ACTCGTCTTA TTAACGACTT GATGCCACTA CTTGCAGAAG CAATAAAAGG AAGTAAAACA CTGCGTTATA AGATGTTCCA AGTGGATTTT TTATCAACAT TAAGCGGTGA AATCTTAGTT TCGATGCTTT ATCACCGTCA ATTAGACGAT GCTTGGAAAG AAGAAGCCGC AGTATTAAAA CAACAATTAA ACGAGAAAGG TTTTAACCTA AATCTTATCG GCCGTGCTCG TAAAATGAAA ATCGTTTTAG ACCAAGAATT TGTCATTGAA AAACTAAAAG TAAATGATGA CATCCTGACT TATAAACAAG TAGAAAATAG TTTTACCCAA CCAAACGGTG TTGTAGCTCA AAAAATGTTG GAATGGGCCG TTGATTGTAC GCAAGACAGC CAAGGCGACT TATTGGAACT TTATTGTGGT AATGGTAATT TTTCATTAGC ATTAGCAAAA AACTTTGATC GCGTATTAGC AACCGAACTT GCAAAGCCAT CCGTAGAATC TGCTCAATAT AATATTGCAG CCAATAATAT AGACAATGTA CAAATTGTTC GTATGTCGGC AGAAGACTTT ACAGATGCAA TGGAAGGAAA GCGTGAATTC CGACGTTTGA AAGATCAAAA TGTAGATTTA AAAAGCTATA ACTGCAATAC CATCTTTGTC GATCCACCAC GTTCTGGCAT GGACGAAGGC ACTTGTAAGA TGGTACAAGG CTATGAGCGT ATTATGTACA TTTCTTGTAA TCCTGACACT CTAAAAGAGA ACCTTGCTAT TTTAAGTAAA ACACACAACA TTACTCGTTT TGCTTTATTT GATCAGTTCC CATATACCCA CCATATGGAA GCCGGCATAT TCTTAGAGCG CAAATAA
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Protein sequence | MTQPVMNPEN YQVQLDEKTE ALSAMFSEFD VPELEVFSSP AENYRMRAEF RIWHEGDDMY YVMFDQKTKE KYRVDYFLPA TRLINDLMPL LAEAIKGSKT LRYKMFQVDF LSTLSGEILV SMLYHRQLDD AWKEEAAVLK QQLNEKGFNL NLIGRARKMK IVLDQEFVIE KLKVNDDILT YKQVENSFTQ PNGVVAQKML EWAVDCTQDS QGDLLELYCG NGNFSLALAK NFDRVLATEL AKPSVESAQY NIAANNIDNV QIVRMSAEDF TDAMEGKREF RRLKDQNVDL KSYNCNTIFV DPPRSGMDEG TCKMVQGYER IMYISCNPDT LKENLAILSK THNITRFALF DQFPYTHHME AGIFLERK
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