| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2675 |
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| Symbol | tolC |
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| ID | 6988923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2893685 |
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| End bp | 2895010 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643380945 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_002264013 |
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| Protein GI | 209696083 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC TGCTTCCGCT TTTTATTGGA ATGGCATTAG GTAGTTTCAG CTCTCTAGCT
ACTGCTGATG ACCTAGCGCA AATCTACAAT CAAGCTAAAG AAAATGACCC CCAATTATTA
AGAGCTGCGG CGACTAAAGA TGCGGCATTT GAAGCGGTGA ACTCTTCTCA AAGTTCATTA
TTACCACAAA TAGATTTAAC CGCAGGTTAC AACATATTAC GTAGTGATGA AGATCGTAGA
GATAATGACC GATTAACTGC AGGTATTAAT TTATCTCAAG AACTTTACCA ACAATCAAGC
TGGGTAAGTT TAGATATTTC TGAGAAAAAT GCTCGCCAAG CAGATTCTGC TTATGCAGCA
GAGCAACAAA ACGTGATTTT ACGTGTTGCT CAGGCTTATT TTGATGTATT ACGTGCTAAC
GACAATCTAG AATTTGTCCG CTCAGAAAAA GCCGCTGTTG GTCGTCAACT TGAACAAACA
AAACAACGTT TTGATGTTGG TCTATCCGCA ATTACTGATG TTCATGATGC ACAAGCTGAA
TACGATAGCG TACTAGCGAA TGAAGTATTA ACCGAAAACC AACTAGTAAA CAGCTACGAA
GATCTTCGTG TTATTACGGG TTTAGGTCAT ACCTCTCTAA GTGTATTAGA TACTAAGCGT
TTCTCTGCGA GTCCTTCAGA ACAATCATCT GACACTTTAA TTGAAGAAGC TCAAAAGAAA
AACTTAACAC TATTGGCTTC TCGCATTAGT GCTGATATTG CAAAAGATAA CATCTCCTTA
GCAAGCTCTG GTCACATGCC ATCGTTAACA TTAGACGCTA GTTATAATTA TACTGACCAA
AGCAATTCGG GCTTATCAGC AAACGACGGT AACTACGGTG ACATCAACGC AGGCATTAAC
TTAAATATCC CTCTATACAC GGGTGGTAAT ACAAGTTCAT TAACAAGCCA AGCTGAATTC
CAATATGTCG CAGCAAGCCA AGATCTTGAA GCTACATACC GCGAAGTCAC TAAAGATGTT
CGTGCTTACA ATAACAACAT TAATGCCTCT ATTGGTGCAT TAAAAGCCTA CGGACAAACG
GTTATCTCAG CAAACTCTGC ATTAGAAGCA ACAGAAGCAG GCTTTGATGT AGGTACTCGT
ACTATTGTTG ATGTGTTGGA TTCAACTCGT CGTTTATACG ATGCAAACCG TAACCTAGCA
AATGCTCGTT ACGATTACAT TTTAAGTGTT CTTCAGCTAA AACAAGCCGT TGGTACACTA
AGCGAACAAG ATATTATCGA TATCAACATG GGTCTAAAAG CGGGTAAAAC AACTCAAGCT
AAATAA
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| Protein sequence | MKKLLPLFIG MALGSFSSLA TADDLAQIYN QAKENDPQLL RAAATKDAAF EAVNSSQSSL
LPQIDLTAGY NILRSDEDRR DNDRLTAGIN LSQELYQQSS WVSLDISEKN ARQADSAYAA
EQQNVILRVA QAYFDVLRAN DNLEFVRSEK AAVGRQLEQT KQRFDVGLSA ITDVHDAQAE
YDSVLANEVL TENQLVNSYE DLRVITGLGH TSLSVLDTKR FSASPSEQSS DTLIEEAQKK
NLTLLASRIS ADIAKDNISL ASSGHMPSLT LDASYNYTDQ SNSGLSANDG NYGDINAGIN
LNIPLYTGGN TSSLTSQAEF QYVAASQDLE ATYREVTKDV RAYNNNINAS IGALKAYGQT
VISANSALEA TEAGFDVGTR TIVDVLDSTR RLYDANRNLA NARYDYILSV LQLKQAVGTL
SEQDIIDINM GLKAGKTTQA K
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