| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2632 |
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| Symbol | pilD |
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| ID | 6988978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2848634 |
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| End bp | 2849521 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380902 |
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| Product | type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) |
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| Protein accession | YP_002263970 |
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| Protein GI | 209696040 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGCTT TTGAATACTA CCCTTGGCTC TTTCCTCTCT TTGCTACTTT ATTTGGCCTA
CTCGTCGGTA GCTTTTTAAA TGTGGTCATC TACCGTTTAC CCATAATGAT GGAAAAAGAA
TGGAAAAAAG AATGCACTGA GTGCTTTCCT GATTTGAAAT CCACACCAAA AACAGCGGAT
ATAGAAGAAA AATTCAATCT AAGTGTTCCT CGTTCACGCT GCCCTAAATG CAATACTCAA
ATAAAATTTT ACGATAACAT TCCCGTTATT AGCTGGTTGT TGTTGCGTGG AAAATGCCGT
CAATGCAGTA ATCCTATTAG CTTCCGTTAT CCTGCCATTG AGCTTCTGTC AGGCGCAATG
TGTTTTGGCG TCTCTTACTT ATTACCATTT TCTTATTTTG CTATTGCTGC CGTTCTTTTT
ACTCTAACGC TTATTGCATT AACCTTTATT GATATCGATA CCATGTTACT CCCCGATCAA
ATAACGCTGC CATTACTGTG GACTGGCCTA TACTTATCCT TAGTCGGTTG GAGTTCAGTC
AGCTTAATGG ATTCGGTCAT TGGAGCCATG GCTGGTTATT TAATATTATG GTCCATTTAT
TGGGCATTTA AATTATTAAC CGGTAAAGAA GGCATGGGTT ATGGGGACTT TAAATTATTA
GCCGCACTTG GTGCTTGGCT TGGTTGGCAA CAATTGCCAT TAATCGTTTT ATTGTCTTCT
ATTGTTGGTG CCATCATTGG CATTGCAATG TTAAGGGCAC AAAAAAATGG GTATGACAAA
GCCATTCCAT TTGGTCCTTA TCTCGCGATT GCAGGTTGGA TATGTTTATT GTGGGGCCAA
GAAATTAGCC AATGGTACTT CACCTCAATT CTAGGGTTTC CCGTATGA
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| Protein sequence | MAAFEYYPWL FPLFATLFGL LVGSFLNVVI YRLPIMMEKE WKKECTECFP DLKSTPKTAD
IEEKFNLSVP RSRCPKCNTQ IKFYDNIPVI SWLLLRGKCR QCSNPISFRY PAIELLSGAM
CFGVSYLLPF SYFAIAAVLF TLTLIALTFI DIDTMLLPDQ ITLPLLWTGL YLSLVGWSSV
SLMDSVIGAM AGYLILWSIY WAFKLLTGKE GMGYGDFKLL AALGAWLGWQ QLPLIVLLSS
IVGAIIGIAM LRAQKNGYDK AIPFGPYLAI AGWICLLWGQ EISQWYFTSI LGFPV
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