| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2625 |
|---|
| Symbol | aceE |
|---|
| ID | 6988216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2839473 |
|---|
| End bp | 2842136 |
|---|
| Gene Length | 2664 bp |
|---|
| Protein Length | 887 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643380896 |
|---|
| Product | pyruvate dehydrogenase subunit E1 |
|---|
| Protein accession | YP_002263964 |
|---|
| Protein GI | 209696034 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.577913 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA TGAAGCATGA CGTTGATGCA CTAGAAACTC AAGATTGGTT AGAAGCTCTT
GAGTCAGTTG TACGTGAAGA GGGTGTTGAA CGCGCCCAGT ATCTATTAGA GCAAGTTCTT
GATAAAGCTC GTTTAGATGG TGTTGATATG GCTACAGGTA TCAATACAAA CTACATCAAT
ACCATCCCAG CAACGCAAGA ACCTGCGTAC CCTGGTGATG TTACTCTTGA GCGTCGTATC
CGTTCAATTA TTCGTTGGAA CGCAATCATG ATCGTTCTAC GTGCTTCTAA GAAAGATTTG
GATCTAGGCG GCCACATGGC GTCTTACCAA TCTGCAGCAG CATTTTACGA AGTCTGTTTT
AACCATTTCT TCCGTGCTCC GAATGAGACG GATGGTGGTG ATTTAGTTTA TTACCAAGGT
CATATCTCTC CAGGTATCTA TTCTCGTGCA TTCGTTGAAG GTCGTTTAAC GGAAGAGCAA
CTAGATAACT TCCGTCAAGA AGTTGATGGT AAAGGTATTC CTTCTTACCC GCACCCTAAA
CTGATGCCTG AATTCTGGCA GTTCCCTACC GTATCTATGG GTCTTGGTCC TATTTCTGCA
ATCTATCAAG CGCGTTTCCT TAAGTACCTT GATGGCCGTG GCATGAAAGA AACATCAGCA
CAACGTGTTT ACGCGTTCCT AGGTGATGGT GAGATGGATG AGCCAGAATC ACGCGGTGCG
ATCTCTTTCG CTGCTCGTGA AAAACTGGAC AACCTATGTT TCTTAATTAA CTGTAACCTA
CAGCGTCTAG ATGGCCCTGT TATGGGTAAC GGTAGCATCA TTCAAGAACT AGAAGGCCTA
TTTAAAGGCG CTGGCTGGAA TGTTGTTAAA GTTATTTGGG GCAGCAACTG GGATTCACTA
CTTGCTAAAG ACACGACTGG TAAGCTTCTT CAGTTAATGA ACGAAACTAT CGATGGTGAT
TACCAAACAT TCAAATCTAA AGATGGTGCT TACGTACGTG AGAACTTCTT TGGTAAATAC
CCAGAAACAG CAGCACTTGT TGCTGACATG ACTGATGACG AAATCTTCGC TCTTAAGCGT
GGTGGTCATG ACTCATCTAA ACTGTTTGCT GCATTCAACA ATGCAAAAGA AACAAACGGT
AAGCCAACAG TAATCCTAGC TAAAACAGTT AAAGGTTACG GCATGGGTGA TGCAGCTGAA
GGTAAGAACA TTGCACACGG TGTTAAGAAA ATGGACATGA CTCATGTTCA ACACTTACGT
GATCGTTTAG GCCTACAAGA CATTCTTTCT GATGAGAAGA TTAAAGAACT GCCTTATCTA
ACACTAGAAG AAGGTTCTGC AGAGTACAAA TACCTACACG CTCGTCGTGA TGCGCTACAT
GGTTATACGC CTAAGCGTCT GCCTAAGTTC ACTCAAGAAT TCATTGTTCC TGAAGTTAAC
GCGTTTGATG CTCTTCTTGG TGAACAAAAG CGTGATATCT CTACGACAAT GGCATTTGTT
CGTGCGCTTA ACGTTCTTCT TAAAGACAAA AATATTGGTA AGAACATTGT TCCTATCATT
GCCGATGAAG CTCGTACTTT TGGTATGGAA GGTTTATTCC GTCAGGTTGG TATCTATAAC
CCACACGGCC AAACATATAC TCCTGAGGAT AAAGGCATTG TTTCTTACTA CAAAGAAGCA
ACGTCTGGTC AAGTACTTCA AGAAGGCATC AATGAGTTAG GTGCTATGTC TTCATGGGTT
GCCGCAGCAA CGTCATACAG CACTAACGAT CTTCCTATGA TCCCATTCTA CATTTACTAC
TCTATGTTCG GTTTCCAACG TGTTGGTGAT ATGGCATGGA TGGCGGGTGA CCAACAAGCA
CGTGGTTTCC TATTAGGCGC TACTGCAGGT CGTACTACGC TAAATGGTGA AGGTCTACAA
CACGAAGATG GTCACTCACA CATTCAAGCG AACACCGTGC CTAACTGTAT CTCTTACGAT
CCAACATTCG CTTACGAATT AGCGATCATC ATGCAAGACG GTATTCGTCG CATGTACGGT
GAAAACCAAG AGAACATTTA TTACTACCTA ACGCTAATGA ATGAAAACTA CGCAATGCCA
GCAATGCCAC AAGGCGCTGA AGAAGGCATT CGTAAAGGTA TTTATAAGCT TGAGTCTTAC
GTTGGTGATA AAGCTAAAGT TCAATTAATG AGCTCTGGTA CTATCATGAA CGAAGCACGT
AAAGCGGCTC AAATTTTGAG TGAAGAGTAC GGTGTTGCTT CTGATGTTTA CTCTGTGACA
TCGTTCAATG AATTGACTCG TGACGGCCAA GCGGTAGAGC GTGACAACAT GCTTCACCCT
GAAGCTGCAA CGAAAGTACC TTACATTACT CAAGTTCTTG GTAACGAACC TGCAATCGCA
GTAACGGATT ACATGAAGAA CTACGCTGAG CAAGTACGTG CATTCGTTCC TGCTGAGTCT
TACAAAGTAC TTGGTACTGA TGGTTTTGGT CGTTCAGACA GCCGTGAGAA CTTACGTCGT
CACTTCGAAG TTAACGCAGG CTACGTTGTA GTTGCTGCTC TAGCTGAACT TGTGAAACGT
GGTGATATTG ATAAATCTGT AGTTGCAGAA GCAATTGCTA AATTCAATAT CGATACTGAA
AAAACTAACC CGCTATACGC ATAA
|
|---|
| Protein sequence | MSDMKHDVDA LETQDWLEAL ESVVREEGVE RAQYLLEQVL DKARLDGVDM ATGINTNYIN
TIPATQEPAY PGDVTLERRI RSIIRWNAIM IVLRASKKDL DLGGHMASYQ SAAAFYEVCF
NHFFRAPNET DGGDLVYYQG HISPGIYSRA FVEGRLTEEQ LDNFRQEVDG KGIPSYPHPK
LMPEFWQFPT VSMGLGPISA IYQARFLKYL DGRGMKETSA QRVYAFLGDG EMDEPESRGA
ISFAAREKLD NLCFLINCNL QRLDGPVMGN GSIIQELEGL FKGAGWNVVK VIWGSNWDSL
LAKDTTGKLL QLMNETIDGD YQTFKSKDGA YVRENFFGKY PETAALVADM TDDEIFALKR
GGHDSSKLFA AFNNAKETNG KPTVILAKTV KGYGMGDAAE GKNIAHGVKK MDMTHVQHLR
DRLGLQDILS DEKIKELPYL TLEEGSAEYK YLHARRDALH GYTPKRLPKF TQEFIVPEVN
AFDALLGEQK RDISTTMAFV RALNVLLKDK NIGKNIVPII ADEARTFGME GLFRQVGIYN
PHGQTYTPED KGIVSYYKEA TSGQVLQEGI NELGAMSSWV AAATSYSTND LPMIPFYIYY
SMFGFQRVGD MAWMAGDQQA RGFLLGATAG RTTLNGEGLQ HEDGHSHIQA NTVPNCISYD
PTFAYELAII MQDGIRRMYG ENQENIYYYL TLMNENYAMP AMPQGAEEGI RKGIYKLESY
VGDKAKVQLM SSGTIMNEAR KAAQILSEEY GVASDVYSVT SFNELTRDGQ AVERDNMLHP
EAATKVPYIT QVLGNEPAIA VTDYMKNYAE QVRAFVPAES YKVLGTDGFG RSDSRENLRR
HFEVNAGYVV VAALAELVKR GDIDKSVVAE AIAKFNIDTE KTNPLYA
|
|---|
| |