| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2575 |
|---|
| Symbol | chiS |
|---|
| ID | 6989212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2770458 |
|---|
| End bp | 2773841 |
|---|
| Gene Length | 3384 bp |
|---|
| Protein Length | 1127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643380844 |
|---|
| Product | chitin degradation sensor protein |
|---|
| Protein accession | YP_002263922 |
|---|
| Protein GI | 209695992 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA AACAACACTT TAAACGTCTT CAAAATACGT TAATGATTGC ATTTCTTGTT
TTAAGTATTA CTCCTCTTTC TGTTATTGCT ATATTTTTTC TACACTCACA TAGCCAAGAT
CTCGCAACTC AAAGTACGGC GCATCTTGTT TCATTAAGAG ACAATAAAGA GCAGCAAGTA
AGTAACTACG TCAAAGCTCG TAAATCAGAA GTGCTTGGCT TTGCTCGTTC CGAGTTAGCT
AATGCTAGTG GTGGGCGTTT CTATGGTTTA ATTAGTGCCT TTCCTCGTCT TGGTAATACG
ATTGAAGATG CGAGGAGCAA TGCTCAAATT CGATACATTG GCGGCTCTGG TAATAAAATA
CGAACCAGTA TTCTTCCTGA ATCCGATTCT TATATTGGCA GTGAACGCTA TAGTCTACTT
CATAAACGAT ACCACTGGGC ATACCTTGAA TTATTAAAGC GATCTGATTT CACTGACATT
CTTTTAGTCG ATATCGATGG TAATGTCGTT TATTCCCAGA AAAAAGAAGA TAACTACGGT
ACTAATTTAA TTACGGGAAA ATACCACGAC ACACCACTTG GAAAAACCTA CAGTAAAATT
CGGTCTATGA TGGAAAAACC AGAAAATAAA GACGATATTC CTGTCGTATT TTCTGACTTT
TCTATTATGA ATGGAGAAAA TGTCTCTTGG TTTGCGGCAC CAATTGTACA GCAAGGTTAT
TTGCACAGCT TCGTCTTGTT TAAACTGCCA AACAACGGTC TAAGCCTACT ATTAAAAAAT
GGACAACAAG ATTCATCATC GATAAAAAGC TATCTTGTTG GTGATAATTC TCTTTCTTTA
ATTAGTGGTA TCAGTACCGA TAAAAATACG TCTGAAAATA TTATTCAAGC ATTAAGCGGG
AAAACTGACG TAGGTAGCTT TACTGATAAA AGTAATAATA GTGTACTTTC TGCTTTTACC
GTGGTTCACA TTGATGACAA AGTATGGGGA CTCTCTGTTG AATTACCAGA AAAAGAAGCC
TTCTCTCGTA TCAAACAATT AGAACAAATT TTTGTTATCG CGATGATCTT AGCCATTGTG
TGTGTTGTTA TTGCTTCCCA TTTCTTATCA AATTCAATTA CTGCACCTTT ATTGAGGTTA
ACGTGGGTAG CAGAGAGACT CTCGGCAGGC GATCTCGATC AAAAAATGAT CAGCACCGAT
CGAAAAGATG AAATAGGACG ATTAGCAGTC AGCTTTGCAC GTATGCAGCG ATCTATTCGT
GAAAAAATTC AATTAATCAA AGCTCAAAAT GAAGAATTAG AAACAAACCT TTCTATTATT
CAACATAAAA ACCAAGAATT AGAAGCGGCT GATAAACTCA AAGATGAATT CCTAGCCACC
ACATCTCATG AATTAAGAAC ACCATTACAC GGTATGGTCG GTATTGCTGA AGCCCTTTAT
ACCGGGGCTA ATGGTCCAAT CTCCGCTTCT CATCGTCATC AATTAGAAAT TATAATTAAT
AGTGGCCAGC GCCTAACCAA CTTAGTGAAT GATCTTTTGG ATTACCACAA AATGCGTCAC
GGCAATCTGG ATATAAATCG CCACGTTGCC GACTTATCAT CGGCAACAAG TTTGGTTTTA
GAGTTATCGC ATCATTTGCT GGGCAACAAA CCAATAAGAA TAATCAATCA AGTAGATAAG
TCTTTACCTT CTGTCTATGC TGATGAACAA CGATTAGAAC AAGTACTTTA TAATTTAATC
GGTAATGCGA TTAAATATAC TTCAGAAGGA AAAATTGTTA TTTCAGCAAG TGTTGTCGAT
CAATTCTTAC GAGTTCAAGT TGTCGATACT GGTCATGGTA TTCCTGCTGA TGAATTAGAG
CATATTTTTG AACCCTTAAT TCAAGCAGGG CATGATTCTA ATCGCTATCG CCAAGGATCA
GGGCTTGGTT TGTCAATCAG TCGTCAATTA ATAGAATTAA TGGGTGGATC GCTGTACGTA
AGCAGCCAAC CAATGGTTGG CGCGACCTTT AGCTTTACTT TACCTTTAGC ATCTAAAGAT
CAAATTCAAC AACATAAATC CCTAACAAAA GAAGATATTG CTCATTATCA AACACCAGAA
AAACTAGAAT ATAACTTAGA CGATTTAGAT GAAACTCAAC CAGAAAATCC GAATGGTCCT
TTACTTCTTG TTGCTGATGA TGAGCCCGTT AATTTACAAG TGTTAAGTAG TTTCTTAAAA
CTGGAAGGCT ATCGCGTAAA AACGGCCAAT GATGGCCCTG AGACATTAAA ACAGTTAGAA
GAAGAAACCC CTGAATTAGT GCTACTAGAT GTCATGATGC CAGGAATGAG TGGATATGAG
GTATGCCAAG AGGTCAGAAA GCAATATAGC CACTCTCAAT TGCCTATTAT CATGCTCACG
GCTTTAAACC AAACTCAAGA TAGAGTGAGA GGTTTTGAAT CAGGTGCTAA TGACTATTTG
AGTAAACCAT TTAATAAACA AGAGCTGGCG GCAAGGATAA AAGCACATTT ACAAGCAAGC
CAAGCAGAAA TAAGGCTAAC AGAGAATGAT CGCTTACAAC AAGAGATCCG ACATAGAGAA
AAAGTAGAAG CCAGTTTATT AGAAACACAA ACTCATATCT TAGGGCAACT AAACCATGCC
CAAGAAGCCA TTATTTGTGC TAAATCTGAC GGTAAAATTC AATATGTTAA CCATGCAGCA
GCAAAACTTT TTTTACGTAC AGAAGAGCAA TTGTCACGAT ATTCAATTGA TGAGTTAATT
GCTAAACGCA GCTTAATTGA GGGTGATAAA CATCATAGAG GTAATATCGA TGTCTATATT
GATGGTTCTA TTGAACAAAT TAATGCTGAC TTAGTACACC TACCTCCCGC ATCAGGCTTA
TCTCTAATGC TTATTGTTAG TCATAAAAAT GAAGCCAGTG AGCAGCGTAT ATATGATTTA
GAAAGCGCGG TAGAAGCATT GTCTGCGTTT GCTTTCGAAG GAGATAAGCA AAAGCTTAAC
TCTTTGTCTT CTATTGGTGG TGACATTGCA CAATTGGCAA TTAAAGCGAA TGAAAATAAA
GAAGATAAGG GAACAATTAT GCGAGAACTC ATTGTTGATG GCATGATATC TGCCCTATCT
TATTGGGAAG AATCTACTGG GCATTCAAAG TTTACACTCG CAGAAGAAAG TGGATTATGG
CGCGTATATC TTGATAGAAG CACATTGCAA ACTCGTACGC TAGATAAGTA TTTACGAGTT
GAGTCTCTCC CTAAAACACC ACGTTGGCGA ACGGTAGTCA GTACATTGGA ATATATTCTA
GAACATTGTA ACGAACATAA CCAAGACAGA GAGAAGCTCA TAAGAATAAA AGATAAGCTT
CAAATTCTTA TTTCATCAAA TTAA
|
|---|
| Protein sequence | MDKKQHFKRL QNTLMIAFLV LSITPLSVIA IFFLHSHSQD LATQSTAHLV SLRDNKEQQV
SNYVKARKSE VLGFARSELA NASGGRFYGL ISAFPRLGNT IEDARSNAQI RYIGGSGNKI
RTSILPESDS YIGSERYSLL HKRYHWAYLE LLKRSDFTDI LLVDIDGNVV YSQKKEDNYG
TNLITGKYHD TPLGKTYSKI RSMMEKPENK DDIPVVFSDF SIMNGENVSW FAAPIVQQGY
LHSFVLFKLP NNGLSLLLKN GQQDSSSIKS YLVGDNSLSL ISGISTDKNT SENIIQALSG
KTDVGSFTDK SNNSVLSAFT VVHIDDKVWG LSVELPEKEA FSRIKQLEQI FVIAMILAIV
CVVIASHFLS NSITAPLLRL TWVAERLSAG DLDQKMISTD RKDEIGRLAV SFARMQRSIR
EKIQLIKAQN EELETNLSII QHKNQELEAA DKLKDEFLAT TSHELRTPLH GMVGIAEALY
TGANGPISAS HRHQLEIIIN SGQRLTNLVN DLLDYHKMRH GNLDINRHVA DLSSATSLVL
ELSHHLLGNK PIRIINQVDK SLPSVYADEQ RLEQVLYNLI GNAIKYTSEG KIVISASVVD
QFLRVQVVDT GHGIPADELE HIFEPLIQAG HDSNRYRQGS GLGLSISRQL IELMGGSLYV
SSQPMVGATF SFTLPLASKD QIQQHKSLTK EDIAHYQTPE KLEYNLDDLD ETQPENPNGP
LLLVADDEPV NLQVLSSFLK LEGYRVKTAN DGPETLKQLE EETPELVLLD VMMPGMSGYE
VCQEVRKQYS HSQLPIIMLT ALNQTQDRVR GFESGANDYL SKPFNKQELA ARIKAHLQAS
QAEIRLTEND RLQQEIRHRE KVEASLLETQ THILGQLNHA QEAIICAKSD GKIQYVNHAA
AKLFLRTEEQ LSRYSIDELI AKRSLIEGDK HHRGNIDVYI DGSIEQINAD LVHLPPASGL
SLMLIVSHKN EASEQRIYDL ESAVEALSAF AFEGDKQKLN SLSSIGGDIA QLAIKANENK
EDKGTIMREL IVDGMISALS YWEESTGHSK FTLAEESGLW RVYLDRSTLQ TRTLDKYLRV
ESLPKTPRWR TVVSTLEYIL EHCNEHNQDR EKLIRIKDKL QILISSN
|
|---|
| |