Gene VSAL_I2542 details

Gene Information

• Locus tag: VSAL_I2542
• Symbol: rpiA
• ID: 6987808
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2722637
• End bp: 2723293
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643380807
• Product: ribose-5-phosphate isomerase A
• Protein accession: YP_002263890
• Protein GI: 209695960
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0120] Ribose 5-phosphate isomerase
• TIGRFAM ID: [TIGR00021] ribose 5-phosphate isomerase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCAAG ACGAGATGAA AAAAGCAGCC GGTTGGGCAG CGTTAGAATA CGTAGAAGTT 
GGCAGCATTG TTGGTGTAGG TACAGGATCA ACAGTAAATC ATTTCATCGA CGCACTTGCG 
ACAATGAAAG ATGACATTAA AGGTGCGGTA TCAAGTTCAG TTGCTTCAAC AGAAAAACTA 
AAAGAACTCG GTATTGAAGT TTTTGATTGT AACGATGTTG CTGGTCTTGA TGTTTATGTC 
GATGGCGCGG ATGAAATCAA TGGTCTGAAC GAGATGATTA AAGGTGGTGG TGCAGCCCTT 
ACTCGTGAAA AAATCGTTGC TGCAATTTCT GATAAGTTTA TTTGTATTGT TGATAACACA 
AAACAAGTCG ACATATTAGG TGAGTTTCCT CTTCCTGTTG AAGTCATTCC AATGGCACGC 
TCTTATGTTG CTCGTGAACT GGTTAAGTTA GGTGGTGATC CTGCCTACCG TGAAGGCGTT 
GTTACTGATA ATGGTAATAT GATCTTAGAC GTTCACAACA TGAAAATCAC CAATGCGAAA 
GAGCTTGAAG ATAAAATTAA TGCCCTTCCT GGTGTTGTGA CGGTTGGTTT ATTTGCTCAC 
CGTGGCGCCG ATGTTTTATT GGTTGGCGCT CCTGATGGCG TAAAAAAATT CGTTTAA 

 

Protein sequence

MTQDEMKKAA GWAALEYVEV GSIVGVGTGS TVNHFIDALA TMKDDIKGAV SSSVASTEKL 
KELGIEVFDC NDVAGLDVYV DGADEINGLN EMIKGGGAAL TREKIVAAIS DKFICIVDNT 
KQVDILGEFP LPVEVIPMAR SYVARELVKL GGDPAYREGV VTDNGNMILD VHNMKITNAK 
ELEDKINALP GVVTVGLFAH RGADVLLVGA PDGVKKFV