| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2519 |
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| Symbol | rumA |
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| ID | 6989086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2700070 |
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| End bp | 2701386 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643380783 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_002263867 |
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| Protein GI | 209695937 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.163711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAT TCTTCAAACC GAAAAAGAAA GCTTCGGTAA ACACAAAACA CCTATCTGTA
GATGTGGTTC GATTAGACCA CAATAGTGCG GGTATTGCTT TTGTGGATAA AAAACCGGTG
TTTATCGAAG GCGCCTTACC TGAAGAACAA GCGATAATTC AATTCATTGA GCAAAAGAAA
CAATATTCTC GTGCTAAATT GATTAAATTG ACAAAAAAAA GCAGTAAACG CCAAGCTCCA
ATTTGTCAGC ATTATGACGA TTGTGGTGGT TGTAATCTTC AACATTTACA GCATGCAGAG
CAAATCATTG CTAAAAATGA CAAGCTGCAA GAGTTAATGA AAAAACAAGG TGTTGATGCT
TGTGATGTTG CTGAACCCAT TCTTGCGAAT GAGCATGATT ACCGACGCCG AGCTCGTATT
AGTTTAATCA TGAATAAACA AACGAATCAA TTGGATTTTG GTTTTAGAAA AAAACAGAGC
AAAGAAATTG TTAATGTTCG TCATTGTCCC GTTTTAGTAA AAGAACTCGA TCAGCATTTA
GAATCGCTAT ACACCTTACT TAATCAGCTT AAAGGTAAGC GACATTTAGG TCATGTTGAA
TTAGTTCAAG CAGATAACGG AAGTGTATTG CTCATTCGCC ATGTCGCTGC ATTTAATGAA
AAAGATCAAC AAGCTTTACT TCATTATTGT GAAGAACGAG ATTTGATCCT ATACCTAATG
CCTGAGTCAG ATGTATTGAA TCACGTATAT GGCGAAGAAC CGTATTATGT CATTGATGAG
GTGAAGATTT ATTTTACGCC TAAAGATTTC ATTCAAGTTA ATGCCTCAAT TAATGACAGC
ATGGTAAATC AAGCATTAAC TTGGTTGGAT CTCAATGCGG ACGATTGTGT ACTCGATTTA
TTCTGTGGCT TAGGTAATTT CAGTTTGCCA TTGGCACAGA AAGTAAAAAC AGTCGTAGGT
ATTGAAGGCG TTGAAGAAAT GGTTAAGCGC GCTCAATCTA ACGCAAAACG AAATGAATTA
GATAATGTGA CGTTTTATCA AGCAAATTTA GAAGAGCCGA TTGATCAGCA AGTGTGGGCA
AGCACAAAGT TTACAAAGAT TTTACTGGAT CCTGCCAGAG CAGGGGCTGC AGGAGTGATG
CAAACTGTGG CAAAATTGAA GCCTGAAACC GTCGTTTATG TATCGTGCAA CCCAGCAACA
CTTGCACGCG ATAGCCAATT GCTTATTCAA CGCGGTTACA AGCTTACTAG GCTAGGTATG
CTTGATATGT TCCCACATAC GGGACATTTA GAATCTATGG CATTGTTTGA GCGATAA
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| Protein sequence | MAQFFKPKKK ASVNTKHLSV DVVRLDHNSA GIAFVDKKPV FIEGALPEEQ AIIQFIEQKK
QYSRAKLIKL TKKSSKRQAP ICQHYDDCGG CNLQHLQHAE QIIAKNDKLQ ELMKKQGVDA
CDVAEPILAN EHDYRRRARI SLIMNKQTNQ LDFGFRKKQS KEIVNVRHCP VLVKELDQHL
ESLYTLLNQL KGKRHLGHVE LVQADNGSVL LIRHVAAFNE KDQQALLHYC EERDLILYLM
PESDVLNHVY GEEPYYVIDE VKIYFTPKDF IQVNASINDS MVNQALTWLD LNADDCVLDL
FCGLGNFSLP LAQKVKTVVG IEGVEEMVKR AQSNAKRNEL DNVTFYQANL EEPIDQQVWA
STKFTKILLD PARAGAAGVM QTVAKLKPET VVYVSCNPAT LARDSQLLIQ RGYKLTRLGM
LDMFPHTGHL ESMALFER
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