| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2501 |
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| Symbol | |
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| ID | 6988397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2680823 |
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| End bp | 2682037 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643380765 |
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| Product | nucleoside transport protein (nucleoside permease NupC) |
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| Protein accession | YP_002263849 |
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| Protein GI | 209695919 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG1972] Nucleoside permease |
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| TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATTT TATTTATTCT ACTTGGCATG TGCGCGCTTA TTTTTTGTGC ATGGATATTT
TCTGAAAAAC GTTCAGCTAT CAATTGGAAA ACCGTTCTTA GAGCTCTTTT TCTACAACTC
ACTTTTGCAG CTCTTGTACT TTACTTTCCA TGGGGTCAGA CGGCTCTTGC TGCGCTAAGC
AGTGGGGTAT CAAGTTTGTT GGGTTTTGCT GATGAAGGCA TCGCGTTTTT ATTTGGTGAT
TTAGCATCAA CAGGCTTTAT TTTTGCGATT CGTGTATTAC CAATCATTAT TTTCTTCAGT
GCCTTAATTT CTGCTCTGTA TTATTTAGGC ATCATGCAAA AAGTGATCGC TGTTTTAGGT
GGCGCGGTTC AGAAATTCTT AGGAACAAGT AAGGTTGAAT CTTTAGTTGC GACAGGTAAC
ATCTTCTTAT CTCAAGGTGA ATCTCCTCTA CTTATCCGTC CATTCTTGGC AAAAATGACA
CGTTCGGAGC TGTTTGCTGT GATGGTCGGT GGTATGGCAT CGGTTGCTGG TAGTGTTCTA
GGTGGTTATG CCGGATTAGG GGTTGAGCTT AAATATTTAA TCGCAGCAAG CTTTATGGCG
GCACCCGGCA GTTTATTAAT GGCTAAGATT TTAGTGCCTG AGCAAGAAAC GCCGGTTGAT
CAGCATGAGT TAACGATCGA TAAAAGCGAA CAGAGTAATG TGATAGATGC ACTGGCAAGT
GGTGCAATGA ATGGCATGAA AATCGCGGTC GCTGTCGGTA CGATGTTAAT TGCTTTTGTC
AGTGTGATTG CAATGCTAAA CAGCGGACTA GAAATGGTTG CTGGATGGTT TGGCTTTGAA
GGCATAACGC TGCAAATTGT GTTTGGTTAT TTATTTGCAC CTATTGCTTG GATCATTGGT
ATTCCTGAAA GTGAAATGGT GATGGCGGGT TCATACATTG GCCAAAAAAT AGTATTAAAT
GAGTTCGTTG CTTTTATCGA CTTTGTTCAA CATAAAGATC AATTATCAGC TTACAGCCAA
GTAATTATTA CTTTTGCATT ATGTGGTTTT GCTAATATTA GCTCGATAGC GGTTCAATTA
GGTTCTATTG GTGTGATGGC ACCAGAGCGC CGTGCTGAAG TCGCGAATAT GGGTTTTAAA
GCGGTACTTG GTGGCACGTT AGCTAACTTA ATGAGTGCGT GTTTAGCTGG TTTGTTCTTT
AGTTTATCTC TGTAA
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| Protein sequence | MTILFILLGM CALIFCAWIF SEKRSAINWK TVLRALFLQL TFAALVLYFP WGQTALAALS
SGVSSLLGFA DEGIAFLFGD LASTGFIFAI RVLPIIIFFS ALISALYYLG IMQKVIAVLG
GAVQKFLGTS KVESLVATGN IFLSQGESPL LIRPFLAKMT RSELFAVMVG GMASVAGSVL
GGYAGLGVEL KYLIAASFMA APGSLLMAKI LVPEQETPVD QHELTIDKSE QSNVIDALAS
GAMNGMKIAV AVGTMLIAFV SVIAMLNSGL EMVAGWFGFE GITLQIVFGY LFAPIAWIIG
IPESEMVMAG SYIGQKIVLN EFVAFIDFVQ HKDQLSAYSQ VIITFALCGF ANISSIAVQL
GSIGVMAPER RAEVANMGFK AVLGGTLANL MSACLAGLFF SLSL
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