| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2375 |
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| Symbol | dapE |
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| ID | 6987724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2546317 |
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| End bp | 2547450 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643380646 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_002263730 |
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| Protein GI | 209695800 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGACA CTCCAACACT CACTCTCGCG AAAGATCTTC TCAGTCGCCA ATCAGTCACT
CCAGAAGATG CGGGCTGCCA AGAGTTAATG ATTAAACGCC TTAAGGCTCT TGGTTTTACA
ATTGAAATCA TGGTATTTGA AGACACCACC AATTTTTGGG CTCGCCGTGG AACAGAGGCA
CCTTTATTTA CCTTCGCAGG CCACACAGAT GTCGTTCCAA CAGGATCATT AACGCAGTGG
AATACCGATC CTTTTGAGCC AACGATCATC GATGGCATGT TATACGCTCG TGGAGCTGCC
GATATGAAAG GCTCTCTTGC CTGCATGATT GTTGCTGTTG AGCGTTTCAT TTCTGAGCAC
CCAGAACATA AAGGTTCACT CTCTTTCTTA ATCACTTCAG ATGAAGAAGG TCCATTCATT
AATGGCACAA CACGTGTGGT TGATACGCTA AAAGAGCGTA ATGAAATTAT TGATATGTGT
ATTGTTGGTG AACCGTCAAG CACCCAATAT GTTGGCGATG TAGTCAAGAA CGGTCGTAGA
GGCTCTTTAA CTGGAAACTT AACCGTCAAA GGCATTCAAG GTCACGTTGC TTATCCGCAC
ATTGCACGAA ATCCGATCCA CCAATCAATG GCGGCACTAC TTGAACTGAC AATGACTGAA
TGGGATTTAG GTAATGCTTA TTTTCCACCA ACCAGCTTTC AAATTCCGAA CATGAACAGT
GGTACAGGTG CTTCTAATGT GATCCCTGGA ACAGCGGAAA TCATGTTTAA CTTTCGCTTC
AGCACTGAAT CTACCGTCGA AGGCCTACAA CAGCGTGTGA TTGAACTCTT AGATAAACAC
AATTTAGAAT ACGATCTGGA TTGGATTATC AATGGACTTC CGTTCTTAAC CGATACTGGC
GATCTATTAA CAGCCGTTGT TGATGCCGTT GCCACTGTTA ATCAACAGAA GCCTGAATTA
CTAACAACAG GTGGAACATC CGACGGCCGC TTCATTGCTC AAATGGGTTC ACAAGTAATT
GAGCTTGGTC CGGTTAATGC CACTATTCAT AAAGTGAATG AGTGTGTAAA GGTTGATGAT
TTAGAAAAAC TGACTGATAT GTATCAAGAA GTCCTAAATA ATTTACTCGC TTAG
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| Protein sequence | MPDTPTLTLA KDLLSRQSVT PEDAGCQELM IKRLKALGFT IEIMVFEDTT NFWARRGTEA
PLFTFAGHTD VVPTGSLTQW NTDPFEPTII DGMLYARGAA DMKGSLACMI VAVERFISEH
PEHKGSLSFL ITSDEEGPFI NGTTRVVDTL KERNEIIDMC IVGEPSSTQY VGDVVKNGRR
GSLTGNLTVK GIQGHVAYPH IARNPIHQSM AALLELTMTE WDLGNAYFPP TSFQIPNMNS
GTGASNVIPG TAEIMFNFRF STESTVEGLQ QRVIELLDKH NLEYDLDWII NGLPFLTDTG
DLLTAVVDAV ATVNQQKPEL LTTGGTSDGR FIAQMGSQVI ELGPVNATIH KVNECVKVDD
LEKLTDMYQE VLNNLLA
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