Gene VSAL_I2353 details

Gene Information

• Locus tag: VSAL_I2353
• Symbol: ligA
• ID: 6987712
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2526803
• End bp: 2528812
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643380625
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_002263709
• Protein GI: 209695779
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTATTG AAAAAACACT AGATGAGCTT AAAAAACAGC TTAATTATCA CGCTTACCGT 
TATTATGTTG AAGACAGTCC AGAGCTTCCT GATGCTGAAT ATGATCGAAT GATGCAGCAA 
CTATTGTTGA TTGAAAAAGA ACACCCAGAG TTCATGACTG TCGACTCTCC AAGCCAGCGC 
GTTGGTGGTG AAGCATTAGG TGGTTTTACT CAAGTTCAAC ATGAGATCCC TATGTTGTCA 
TTGGATAATG CATTTAACGA TAATGAACTC GACTCTTTTG AAAAACGCAT TAATGATCGT 
CTTATTTCGG ATTCGGTTTC CTTGTTTTGT TGTGAGCCTA AGCTTGATGG TTTAGCGGTA 
AGCCTTTTGT ATGTTGATGG GCTGTTAGTT CAAGCGGGAA CTCGTGGTGA TGGTGCAACA 
GGCGAAAATA TTACAGAGAA CGTAAGAACT ATTCGTTGCA TACCGCTAAC GTTACAAGGA 
GAAGGATGGC CAACTCGTTT AGAGGTTCGC GGTGAAGTCT TCATGCCTAA AGCCGGGTTT 
GATGCGTTAA ATGAAAGAGC GCTAAAACGT GCTGAGAAGC CATTTGCTAA CCCCCGTAAT 
GCGGCCGCTG GCAGTTTGCG TCAACTTGAT TCAAAAATCA CAGCAACTCG CCCATTGAGC 
TTTTATGCAT ATAGTGTAGG AATCATTGAG GGGGGGGAGC TAGAAGGCAG TCATTATCAA 
CGGTTTGTTC AGTTAAAAAA CTGGGGTTTA CCTATGTGTG AAGAGACAAA ACAATGCCAC 
TCACTGACCG ATGTAAAAGC ATATTATAAA GACATTCTCG AGCGTCGAGA TGCATTGAAA 
TATGAAATTG ATGGTGTAGT GATTAAGGTT GATAGTATTT CTTTGCAAGA GCAACTAGGC 
TTTGTTGCAA GAGCCCCGCG TTGGGCTATT GCTTATAAAT TTCCTGCTCA AGAAGAACTG 
ACCGTTTTAA ACGATGTTGA ATTTCAGGTC GGTCGTACTG GGGCAATAAC CCCCGTAGCC 
AAATTAGAGC CTATTTTTGT TGGCGGGGTG ACGGTGAGTA ATGCGACATT ACACAATGCC 
GATGAGATTG CTCGCTTAGG GGTTCATATT GGTGATACTG TCATTATTCG TCGTGCTGGT 
GATGTTATCC CTCAGATTGT ATCAGTCGTA GAAGCTCGTC GTCCTGAAGA CAGTAAGGCG 
ATTATCTATC CAACAACATG CCCTGCTTGT GATTCTCAAC TGGAACGAAT TGAAGGCGAA 
GTCGTCACGC GTTGTGTCGC TGGTTTAGTT TGTCCTGCTC AACGTAAAGA AGCGTTAAAA 
CATTTTGTTT CTCGCAAAGC GCTTGATGTA GATGGCTTGG GAGATAAAGT GGTAGAGCAA 
CTCGTAGATA AAGAAATGGT GGAGACACCG GCTGATTTAT TTAAACTGTC TGCAGGTGTA 
TTAACAGTCC TCGATCGTAT GGGACCAAAG TCAGCGCAGA ATGTGGTCAA TGCATTAAAT 
AAAGCGAAAG AAACGACGTT ATCACGTTTC TTATATTCTT TAGGGATCAG AGAAGTTGGA 
GAGGCGACTG CGGCTAATTT AGCTCTCCAT TTTCAAACAT TAAATGCAAT AAGTTCCGCC 
ACATTTGAAC AATTAATTGA AGTCAGTGAT GTTGGCGATA TTGTTGCTAA ACATATACTT 
GGTTTCTTTA GTGAGCCTCA TAATCAAGCT GTGATTGAAA ATTTACAACT GATGGGCGTT 
AATTGGCCGG ATATTAAAGC GCTTGATGAA TCGGTTCCTC AGCCACTAGC TGATAAAGTT 
GTTGTATTAA CAGGAACATT ATACAAACTA AAACGCAATG AAGCTAAAGC GGCACTACAA 
GAATTAGGCG CTAAAGTTGC TGGTAGTGTA TCGAAGAATA CCGATATTCT TTTTGCTGGA 
GAAGCAGCCG GTTCAAAATT AGCCAAAGCA GAAGAACTCG GTGTTGAAAT AATGAATGAA 
GAACAGTTGA TTGAAATATT AAATAATTAA 

 

Protein sequence

MSIEKTLDEL KKQLNYHAYR YYVEDSPELP DAEYDRMMQQ LLLIEKEHPE FMTVDSPSQR 
VGGEALGGFT QVQHEIPMLS LDNAFNDNEL DSFEKRINDR LISDSVSLFC CEPKLDGLAV 
SLLYVDGLLV QAGTRGDGAT GENITENVRT IRCIPLTLQG EGWPTRLEVR GEVFMPKAGF 
DALNERALKR AEKPFANPRN AAAGSLRQLD SKITATRPLS FYAYSVGIIE GGELEGSHYQ 
RFVQLKNWGL PMCEETKQCH SLTDVKAYYK DILERRDALK YEIDGVVIKV DSISLQEQLG 
FVARAPRWAI AYKFPAQEEL TVLNDVEFQV GRTGAITPVA KLEPIFVGGV TVSNATLHNA 
DEIARLGVHI GDTVIIRRAG DVIPQIVSVV EARRPEDSKA IIYPTTCPAC DSQLERIEGE 
VVTRCVAGLV CPAQRKEALK HFVSRKALDV DGLGDKVVEQ LVDKEMVETP ADLFKLSAGV 
LTVLDRMGPK SAQNVVNALN KAKETTLSRF LYSLGIREVG EATAANLALH FQTLNAISSA 
TFEQLIEVSD VGDIVAKHIL GFFSEPHNQA VIENLQLMGV NWPDIKALDE SVPQPLADKV 
VVLTGTLYKL KRNEAKAALQ ELGAKVAGSV SKNTDILFAG EAAGSKLAKA EELGVEIMNE 
EQLIEILNN