| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2296 |
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| Symbol | fliR |
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| ID | 6988531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2470584 |
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| End bp | 2471366 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643380574 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_002263658 |
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| Protein GI | 209695728 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAATACC CAACTCAAAT AGTTTTAGAT TTTATTGCGA CCTATTTTTG GCCCTACACT
CGAATTTCTT CCATGTTGAT GGTGATGTCG GTGTTTGGGG CTCGATTTGT GTCACCTAAA
ATTCGACTGT ATTTGGGATT AAGTATTACG TTTGCGGTCA TGCCTGCGAT TCCTGCAATG
CCTCCTGAAA TCCAATTGTT GTCTTTTCAA GGTTTTATGA CCACTGCGGA GCAAATCATC
ATTGGTGTTG CGATGGGAAT GGTGACTGTT TTTGTTACCC AAACATTCGT CTTACTTGGG
CAAATTTTGG GTATGCAATC GAGCTTAGGT TTTGCCTCTA TGGTTGACCC GGCTAATGGT
CAAAATACCC CTTTGCTTGG GCAATTGTTT ATGTTTTTGT CGATCTTGTT CTTTTTAGGA
ACTGATGGGC ACTTAAAAAT GATTAACTTT GCGGTGATGA GTTTCACTAC GTTGCCTGTC
GGAGTCGGTA AATTAACCAG TGTTGATTTT CAATCTCTTG CTGGTTGGCT TGGTATTATG
ATGAAAGCCG GTTTAAGTAT GTCATTGTCT GGGATCATCG CGCTACTTAC GGTGAATTTA
TCGTTTGGTG TTATGACTCG TGCCGCACCG CAATTAAACA TTTTCTCATT GGGTTTTGCG
TTTGCATTAC TGGTTGGTTT ACTGCTGACG TCTTACATTG TTCTTGGGTT ATTCACTCAT
TATGATTTGC ATTGGGGTCG TGCTGAAGCA CAGATCTGTA GCCTAATAAG GTTGGATTGT
TGA
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| Protein sequence | MEYPTQIVLD FIATYFWPYT RISSMLMVMS VFGARFVSPK IRLYLGLSIT FAVMPAIPAM
PPEIQLLSFQ GFMTTAEQII IGVAMGMVTV FVTQTFVLLG QILGMQSSLG FASMVDPANG
QNTPLLGQLF MFLSILFFLG TDGHLKMINF AVMSFTTLPV GVGKLTSVDF QSLAGWLGIM
MKAGLSMSLS GIIALLTVNL SFGVMTRAAP QLNIFSLGFA FALLVGLLLT SYIVLGLFTH
YDLHWGRAEA QICSLIRLDC
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