| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2290 |
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| Symbol | fliA |
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| ID | 6988323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2463223 |
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| End bp | 2463954 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643380568 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_002263652 |
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| Protein GI | 209695722 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTAATA CCTTAACTTA CGATCATAAA GGCAATGTGA ACAGTCAGAA AGCATTTTTA
GAGCGCTATT CTGAACTGGT AAAACGCATT GCCCATCACT TAATGGCAAG ATTACCAGCA
AGTGTATTAG TTGATGATTT AATACAGTCT GGAATGATCG GCCTGTTAGA AGCACAACAA
AATTATGACG GCAGTAAAGG CGCAAGTTTT GAAACATACG CTGGAATAAG AATCAGAGGT
TCGATGCTGG ATGAAATTCG ACGCGGGGAC TGGGTTCCTC GCTCTGTTCA TAAGAATAGT
CGAATGGTTA ATGCAGCAAT TAAAGCACTT GAAGCTAAAC TTTCTCGCGA ACCGACCGAT
AAAGAGATAG CAGAACATTT AGAATTACCG TTAGATCAGT ATTATCAGAT ACTTAATGAT
GTAAATTGCG GTAAACTTGT AGGTATGGAA GATTTAGGCG TTTCCGAAGA TGTAATAACA
ACGGAAGAAC ACGCTGATGA TAATATTCCA TTTCAAGGTG TTGTAGATGA ACATTTTCGA
GTTGCTCTTG TGGAGGCGAT TAAAACCCTT CCAGAAAGAG AAGCTTTAGT TTTATCTCTT
TATTATGATG AAGAGTTAAA TTTGAAAGAA ATTGGTGCAG TTATTGGTGT CAGCGAGTCT
CGTGTCAGCC AAATACACAG TCAATCAATG CAACGACTAC GGGCCAAGTT ATCAACTTGG
ACAGTAGAAT AA
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| Protein sequence | MSNTLTYDHK GNVNSQKAFL ERYSELVKRI AHHLMARLPA SVLVDDLIQS GMIGLLEAQQ
NYDGSKGASF ETYAGIRIRG SMLDEIRRGD WVPRSVHKNS RMVNAAIKAL EAKLSREPTD
KEIAEHLELP LDQYYQILND VNCGKLVGME DLGVSEDVIT TEEHADDNIP FQGVVDEHFR
VALVEAIKTL PEREALVLSL YYDEELNLKE IGAVIGVSES RVSQIHSQSM QRLRAKLSTW
TVE
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