| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2233 |
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| Symbol | rne |
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| ID | 6987666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2402274 |
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| End bp | 2405321 |
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| Gene Length | 3048 bp |
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| Protein Length | 1015 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643380515 |
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| Product | ribonuclease E |
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| Protein accession | YP_002263598 |
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| Protein GI | 209695669 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.893079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTGATTAA CGCAACCCAA AAGGAAGAGT TGCGCGTCGC ATTAGTTGAT
GGCCAGCGCC TTTTTGATTT AGATATCGAA AGCCCAGGTC ACGAATCTAA GAAAGCTAAT
ATTTATAAAG GCCGTATCAC ACGTATCGAA CCAAGCTTGG AAGCAGCTTT CGTTGATTAC
GGTGCTGATC GCCACGGTTT CCTTCCCCTT AAAGAAATCG CAAAAGAATA TTTCCCTCAA
GGTTACACTT ATCAAGGTCG TCCAAACATC AAGGACGTTT TGAAAGAAGG CCAAGAAGTT
ATTGTTCAAG TTGAAAAAGA AGAGCGTGGC AACAAAGGCG CGGCTTTAAC AACTTTTATA
TCTCTTGCTG GTAGCTACCT TGTTCTTATG CCTAATAACC CTCGTGCTGG CGGTATTTCT
CGTCGTATCG AAGGTGATGA ACGCACACAA CTTAAAGCGG CACTAAGTAC ATTAGAACTA
CCTCAAGGTA TGGGCTTAAT CGTACGTACA GCAGGCGTTG GAAAATCAGC AGAAGAGCTT
GAATGGGACT TAAATGTTCT ATTAAACCAT TGGGAAGCCG TTAAACACGC TTCTGAATCA
AATCAAGCCC CTTTCCTAAT ACACCAAGAA AGTAACGTAA TTGTTCGCGC AATTCGTGAT
TACTTACGAC GTGATATTGG TGAAATCCTG ATTGACAGCC CTAAAATCTT CGATCGTGCT
CGCCAACATA TCCAACTTAT TCGTCCTGAC TTTTTGTCAC GAGTTAAGTT ATATGAAGGT
GAAGTACCAC TGTTTAGCCA CTACCAAATT GAAAGCCAAA TTGAATCAGC TTTTGATCGT
GAAGTGCGCC TACCTTCTGG CGGCTCAATT GTTATTGACC CTACTGAAGC TCTAACTTCT
ATTGATATCA ACTCTGCTCG TGCTACTAAA GGCGGCGATA TCGAAGAAAC TGCATTAAAT
ACTAACCTAG AAGCAGCCGA TGAAATTGCT CGTCAATTAC GTCTACGTGA TTTAGGTGGT
TTAGTGGTTA TCGATTTCAT TGACATGACG CCAGTTCGTC ATCAACGTGA AGTAGAAAAC
CGTATGCGTG AAGCGGTTCG TATGGATCGT GCTCGTGTTC AAATCGGTCG TATTTCTCGC
TTTGGTTTAT TAGAAATGTC TCGCCAACGC TTAAGTCCAT CTTTAGCAGA AGCAAGTCAC
CATATCTGTC CTCGTTGTAC GGGTACTGGT GTGGTTCGTG ATAATGAATC TCTAGCGCTT
TCAGTACTTC GTTTAATCGA AGAAGAATCT TTAAAAGACA ATACAACTCA AGTTCTTGCT
GTTGTCCCTG TCGCTATCGC TTCTTACTTA TTGAATGAGA AACGCCGTTC AGTTCAACAC
ATTGAAAAAT TCCATAATGT ACGCGTTATT ATTGTTCCTA ACTCTGACAT GGAAACACCA
CACTTCGAAG TGGTCCGTAT CCGTGAAGGT GAAGAACAAG AAATGCTGTC TTATCTTCTT
CCTAAGAATT TAGAAGCATT ACGTGAAGCT GAAGCCAAAG AAACGCCTGC AATGTATTCT
GCACCGAAGA AACGTGAAGA ACCAGTTCTT CAAGGTTTTA GTGCTCCTAC ACAAGCTGCG
CCAATGTCTA AAGCTCCAGA AGAAAAAATA GCTGAACCGA AAACGGTAAT GGCTAAAGAT
GAAAAACCAG GCCTAATCAG CCGTTGTTTC TCAGCTATTA CTAACTTTTT CTCAACGCCT
GAGGCTGTGT CTACTAAATC AGAGCCAAAG GAAGAAGAAG AGAAACCTGC TCAACCACAA
CGCCGTAATC AACAACGTAA TAACAACCGT CGTAATGAAA ATGGTCGTAA TAATCGTAAC
AGCAACCGTC GTAATGACAC GCGTAACGAT AATCGTCGTG GTAAAAAACA AGATGAAGCG
GCAGCACCTT TAGCAGCTCA AGATCCAGCA CCAACACCAA TACCAGCTCA AGTTAAACCT
GTTGAAAACA AACCAGCTAA GCAACCTAAA GTTCGTAAAG AAATTGCTGA GCAAGGTCAA
CAATTAGCCG CTGAAGCGCA ACTATCTCCT GAACAACAAG TACAGGCAAC TGAGAAGACA
AACGAAAAAC GTGAGAAAAG CGTTCAAGTT AAACAACGTC GTCAACGTCG TCAGTTACAG
AAAAAAGTTC GTACAGGTAA AGCAGTTGAA GCTGAAGAAG TACTTGTCGC TCCTATTGCT
CAACCTGTTG ATGCAGTAGA AACGCTAGAA GTACAAGATA CAGCAACAAC TGAAACAAAT
GCAGAGAACA CAGAACGTAA AGAAGGTCAG CGTCGTAATC GTCGTTCACC TCGTCATTTA
CGTGCAAGTG GCCAACGCCG TCGTCGTCGT GATCGTCGTC CAGTGAACCC CGCTCGCCTT
TACTCAGGTG TTTATTCTCC TGAGATGGCA ATGGGTAAAG TATGGCCAGA CTTTGCTAAA
ACATTAGAAC TAGCAAAAGC GAATCTACAA CAAGATAAAT TTGTTGATAA CGACACCCAA
AATGCACAAG ATAAAGCAGC TCAAACTAAT GCTGTAAAAG CTCAAGTTGG TGGTGTTGCA
TTCCCAGAAA TGGCAATGGG TAAAGTATTA CTTCCTTATG TTGCTGTGGA AGCCGTTGTA
ATTGAAGCGA CTCCAGTAGA AGCAACCATT ATTGATAATG TGGTTATTGA AACGCCTATC
GTTGTTATTG AGGAAACTAC ACAAGTAGAA TCACCAGTAA TTATCGAAGA AGTCGTCGAA
ATAAAAGAAG AAGTGGCTAT TCCTGTAGAA CACGCAGTAG TAGAAACAGT CGCTCAAGTG
GAAACACCAG TTGAAGCACC TCTTCAAACA ACAAATGTTG TTGCAAAACC TCAATATAAA
GGACATGCCG GTTCAGGTAT GACGAAAGCG AGCGGACCGA CAGAGATTAA AGAAATCACT
GTTTCTGCAG CAGCCTTTAA AACTGAACGC TTTGCTCCTA AGCAAGCAGG TAGCCAAACC
GCTACTGGTC ATGCAAGTGC AGCAATGGCA AAAACAGCAG GTTTATAA
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| Protein sequence | MKRMLINATQ KEELRVALVD GQRLFDLDIE SPGHESKKAN IYKGRITRIE PSLEAAFVDY
GADRHGFLPL KEIAKEYFPQ GYTYQGRPNI KDVLKEGQEV IVQVEKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDERTQ LKAALSTLEL PQGMGLIVRT AGVGKSAEEL
EWDLNVLLNH WEAVKHASES NQAPFLIHQE SNVIVRAIRD YLRRDIGEIL IDSPKIFDRA
RQHIQLIRPD FLSRVKLYEG EVPLFSHYQI ESQIESAFDR EVRLPSGGSI VIDPTEALTS
IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN
RMREAVRMDR ARVQIGRISR FGLLEMSRQR LSPSLAEASH HICPRCTGTG VVRDNESLAL
SVLRLIEEES LKDNTTQVLA VVPVAIASYL LNEKRRSVQH IEKFHNVRVI IVPNSDMETP
HFEVVRIREG EEQEMLSYLL PKNLEALREA EAKETPAMYS APKKREEPVL QGFSAPTQAA
PMSKAPEEKI AEPKTVMAKD EKPGLISRCF SAITNFFSTP EAVSTKSEPK EEEEKPAQPQ
RRNQQRNNNR RNENGRNNRN SNRRNDTRND NRRGKKQDEA AAPLAAQDPA PTPIPAQVKP
VENKPAKQPK VRKEIAEQGQ QLAAEAQLSP EQQVQATEKT NEKREKSVQV KQRRQRRQLQ
KKVRTGKAVE AEEVLVAPIA QPVDAVETLE VQDTATTETN AENTERKEGQ RRNRRSPRHL
RASGQRRRRR DRRPVNPARL YSGVYSPEMA MGKVWPDFAK TLELAKANLQ QDKFVDNDTQ
NAQDKAAQTN AVKAQVGGVA FPEMAMGKVL LPYVAVEAVV IEATPVEATI IDNVVIETPI
VVIEETTQVE SPVIIEEVVE IKEEVAIPVE HAVVETVAQV ETPVEAPLQT TNVVAKPQYK
GHAGSGMTKA SGPTEIKEIT VSAAAFKTER FAPKQAGSQT ATGHASAAMA KTAGL
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