| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2220 |
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| Symbol | rpsA |
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| ID | 6988336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2387396 |
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| End bp | 2389069 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643380503 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_002263586 |
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| Protein GI | 209695657 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000298041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTCA ACTCTTTGAA GAGTTTTTAT CTGAAACTGA ATTCCAACAA
GGCAGCATCG TTAAAGGTGT TGTTGTTGCT ATCGAGAACG GTTTCGTTCT TGTTGACGCA
GGCCTTAAAT CTGAAGCAGC AATCCCAGCT GAACAATTCA AGAACGCTGC TGGCGAACTT
GAAGTTGAAG TTGGTTCTGA AGTAGACGTT GCTCTTGACG CTGTTGAAGA TGGTTTCGGT
GAAACTCAAC TTTCTCGTGA GAAAGCGAAG CGTCACGAAG CTTGGATTCA ACTTGAAAAA
GCATATGAAG ATGCTGAAAC AGTTATGGGT GTTATTAACG GTAAAGTTAA AGGCGGCTTC
ACAGTTGAAC TTAACGGTAT CCGTGCATTC CTACCTGGTT CTCTTGTTGA TGTACGTCCA
GTACGTGACA CTCTGCACCT TGAAGGCAAA GAGCTAGAGT TCAAAGTAAT CAAACTTGAC
CAAAAGCGTA ACAACGTTGT TGTTTCACGT CGTGCTGTTA TCGAATCTGA AAACAGTGTT
GAACGTGACG AGTTACTTGC TTCTCTACAA GAAGGCATGG AAGTTAAAGG TATCGTTAAG
AACCTTACTG ACTACGGTGC ATTCGTTGAT CTAGGTGGCG TTGACGGTCT ACTACACATC
ACAGATATGG CTTGGAAGCG TGTTAAGCAC CCATCTGAGA TCGTAAATGT TGGTGACGAG
ATCAATGTTA AAGTTCTTAA GTTCGATCGT GAGCGCACTC GTGTTTCTCT AGGTCTTAAG
CAACTTGGCG AAGATCCATG GGTAGCTATC GCTAAGCGTT ACCCAGAAGG TCACAAACTT
TCTGGTCGTG TTACTAACCT AACTGATTAC GGCTGCTTCG TTGAAATCGA AGAAGGCGTT
GAAGGTCTAG TACACGTTTC TGAAATGGAT TGGACTAACA AGAACATCCA CCCTTCTAAA
GTTGTCAATG TAGGCGACGA AGTTGAGGTT ATGGTTCTTG AGATTGACGA AGAACGTCGT
CGTATCTCTC TAGGTCTGAA ACAATGTAAA GCTAACCCTT GGCAGACATT CGCTGAAGCG
CAAGCTAAAG GCGACCATGT TAGTGGTAAG ATTAAATCTA TCACTGATTT CGGTATCTTC
ATCGGTCTTG ACGGCGGCAT CGACGGTCTA GTTCACCTTT CTGACATTTC TTGGAATGCT
ACAGGTGAAG ACGCGGTACG TGAGTACAAG AAAGGCGACG AAATCTCTGC TGTTGTTCTA
GCTGTTGATG CTGAGCGTGA GCGTATTTCT CTAGGTGTTA AACAAATGGA AGAAGACCCA
TTTAACAACT ACCTAGCAGA CAACAAGAAA GGTACTCTAG TAAACGGTAC TGTTTCAGCT
GTTGACGCTA AAGGCGCTAC AATTACTCTT GCAGATAGCG TAGAAGGTTA CATCCGTACT
TCTGAGCTTT CTCGTGACCG TATTGAAGAT GCATCTCTAA TCCTAAGCGT TGGCGATAGC
GTTGAAGCGA AGTTCACTGG TGTAGACCGT AAGAACCGCG TAGTTAACCT ATCTATCAAA
GCTAAAGATG AAGCTGATGA GCAAGAAGCA ATGGCGACAC TGAATACTAA ACCAGAAGAT
GGTGGTTTCG GTAGCGCAAT GGCTGACGCT TTCAAAGCAG CTAAAGGCGA ATAA
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| Protein sequence | MTESFAQLFE EFLSETEFQQ GSIVKGVVVA IENGFVLVDA GLKSEAAIPA EQFKNAAGEL
EVEVGSEVDV ALDAVEDGFG ETQLSREKAK RHEAWIQLEK AYEDAETVMG VINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTLHLEGK ELEFKVIKLD QKRNNVVVSR RAVIESENSV
ERDELLASLQ EGMEVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKFDR ERTRVSLGLK QLGEDPWVAI AKRYPEGHKL SGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNVGDEVEV MVLEIDEERR RISLGLKQCK ANPWQTFAEA
QAKGDHVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNA TGEDAVREYK KGDEISAVVL
AVDAERERIS LGVKQMEEDP FNNYLADNKK GTLVNGTVSA VDAKGATITL ADSVEGYIRT
SELSRDRIED ASLILSVGDS VEAKFTGVDR KNRVVNLSIK AKDEADEQEA MATLNTKPED
GGFGSAMADA FKAAKGE
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