Gene VSAL_I2155 details

Gene Information

• Locus tag: VSAL_I2155
• Symbol: topB
• ID: 6987623
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2312740
• End bp: 2314683
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643380441
• Product: DNA topoisomerase III
• Protein accession: YP_002263525
• Protein GI: 209695596
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACGAT TATTTATTGC AGAAAAACCA AGTTTAGGGC GAGCGATTGC AGCTGGCTTA 
GCCAAGCCAC AAAAAAATCA CCAAGGCTAT ATTGAATGTG GTAATGGTGA CATTGTGACT 
TGGTGTATCG GTCACTTATT AGAACAAGTA GAGCCAGATG CTTATGACGA CAAGTATAAA 
TCTTGGCGTA TGGAGCATCT GCCAATTGTG CCTGAACAGT GGCAACTTCG ACCTAGAAAG 
TCATCGAGTA AGCAATTGAC GGTGATTCGA AAATTACTTA AAACGGCCTC TCAAGTTATT 
CACGCGGGAG ATCCCGATCG AGAAGGTCAG TTATTAGTTG ATGAAGTCCT TGATTACTTA 
AAGTTATCGA AGACAAAAAA AGCGGCGACT CAACGTTTGC TTATTAGTGA TTTGAACTTA 
CCCGCGGTAA AACGTGCCTT ATCTGCTATG AGAAGTAATC AAGAATTTAT TCCTCTTTCT 
ATCTCTGCAT TAGCTCGTTC TCGTGCTGAT TGGCTATATG GCATGAACAT GACTCGAGCT 
TATACTTTGC TAGGGCAACG AGGTGGATAT CAAGGTGTTT TATCAGTAGG CCGAGTACAA 
ACACCCGTTT TGGGACTTGT GACCCGTCGA GATGAAGAGA TCGCACATTT TATTCCTAAC 
GCGTATTTTA CGTTGGACGC GCTTATCCCT TACCATAATC CAAACCTCAA TGGTGGATTA 
CCCTTTGATA TTCGTGCTAA ATGGAAACCA AGCGAGGCAT GTCAGCAATG GCAAGATGAA 
GATGGGCGAG TTCTTAATCT CAAATTAGTC GAAAATGTTG CCCAACGAAT TGCGAATCAA 
CCTGCCACAG TGACTAAAGC TGAAAATAAA GAAACGAAGC AGAATGCGCC TTTGCCGTAT 
TCATTATCTG CATTGCAAAT TGATGCATCA AAACGATATA ACTTAAGTGC TCAGCAAGTA 
CTGGATTCTT GTCAGGCGCT TTATGAAAAG CATAAATTAA TTACGTACCC GCGTTCGGAC 
AGCCGTTATT TACCCAAAGA TCACTATAAA CAGCGTGAAC AAGTGTGTGC TGCGATCGGG 
AATAATGACA AGCAGTTATC TAATGCCGTG AATAATGCCG ATGTAAATTT GCGTTCTCGG 
GCTTGGAACG ACAGTAAAGT AGATGCTCAC CATGCGATTA TTCCAACCCC TAAATCCAGT 
GGGGCTGCAG GGTTATCTGG CTATGAAGAA AAGGTGTATC ACCTTATTGC ACGTCAGTAT 
TTAATGCAAT TTTATCCGGC CGCTATTTAT GCGGAAGCAG AACTTATTTT TGATATTGCG 
GGTGGTGTAT TTTCTGCAAA AGGAAAACAA ATGCTTTTTG CAGGGTGGCG TATATTATTA 
GGTAAAACAC ACACCCAAAA TGCTGACGAT GATGTAGCGA ATAAAGTACC TCCATTAAAA 
AAAGGGGAAG TACATACGTG TCGTGAGGGA GAGATTAAAC ACAAAATGAC AGAGCCGCCA 
AAATACTTTA CCGAAGCCAC CTTATTACAA GCAATGACAG GGATAGCACG CTTTGTTGAA 
GATAAAGAGT TGAAGAAAGT ATTAAGGGAT ACCGATGGTC TAGGAACAGA AGCGACTCGT 
GCCGGTATTC TAGATACTCT TTTTAAACGT CAATTATTGA TTCGTAATGG AAAAAATATT 
AATGCGAGTG ACGCGGGAAA AGGCTTAATT CACGCATTGC CTAGAGAAGC AACTTATCCT 
GATATGACGG CTCATTGGGA GTTCCAGTTA CAAGGCATGA CAGAGAAAAC GTATTCTTAT 
CGTCCATTTA TGCAGTCTCT GGAAACAAAA GTGACTAACT TTATGCAAGG GGTACAACAA 
GGTCCGGTTC CTGATTCGCT GAGATCATTA AAAAGTCCGA CAAAACCGCA ATTTAAACGA 
CGAAAAAGCG CAAAGAAATC GTAG 

 

Protein sequence

MSRLFIAEKP SLGRAIAAGL AKPQKNHQGY IECGNGDIVT WCIGHLLEQV EPDAYDDKYK 
SWRMEHLPIV PEQWQLRPRK SSSKQLTVIR KLLKTASQVI HAGDPDREGQ LLVDEVLDYL 
KLSKTKKAAT QRLLISDLNL PAVKRALSAM RSNQEFIPLS ISALARSRAD WLYGMNMTRA 
YTLLGQRGGY QGVLSVGRVQ TPVLGLVTRR DEEIAHFIPN AYFTLDALIP YHNPNLNGGL 
PFDIRAKWKP SEACQQWQDE DGRVLNLKLV ENVAQRIANQ PATVTKAENK ETKQNAPLPY 
SLSALQIDAS KRYNLSAQQV LDSCQALYEK HKLITYPRSD SRYLPKDHYK QREQVCAAIG 
NNDKQLSNAV NNADVNLRSR AWNDSKVDAH HAIIPTPKSS GAAGLSGYEE KVYHLIARQY 
LMQFYPAAIY AEAELIFDIA GGVFSAKGKQ MLFAGWRILL GKTHTQNADD DVANKVPPLK 
KGEVHTCREG EIKHKMTEPP KYFTEATLLQ AMTGIARFVE DKELKKVLRD TDGLGTEATR 
AGILDTLFKR QLLIRNGKNI NASDAGKGLI HALPREATYP DMTAHWEFQL QGMTEKTYSY 
RPFMQSLETK VTNFMQGVQQ GPVPDSLRSL KSPTKPQFKR RKSAKKS