Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2140 |
Symbol | uvrC |
ID | 6988968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2294845 |
End bp | 2296671 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643380426 |
Product | excinuclease ABC subunit C |
Protein accession | YP_002263510 |
Protein GI | 209695581 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.604529 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCTCCTT TTGATTCAAA AGCTTTTCTA CTATCAGTTA CCCATCAGCC CGGCGTTTAT CGAATGTATA ACGCCGAAGC TGAGGTTATT TACGTCGGTA AAGCAAAGGA TTTAAAAAAG CGATTATCGA GCTATTTTCG CAGTAATATC CCTTCAGAAA AAACCAAAGC CTTGGTCACT CATATTGCAC AAATTGATGT TACGGTCACT CATACAGAAA CTGAAGCATT AATTCTTGAG CATAATTATA TTAAGCAATA TTTACCTAAA TATAATGTGC TGCTGCGTGA TGATAAATCT TATCCTTACA TTTTTATTTC GAATCATAAG CATCCAAGGA TCTCCATTCA TCGTGGTACG AAACGAAAAA AAGGAGAATA TTTTGGACCT TATCCTGATT CAGGAGCGGT TAGAGATTCC CTTCATCTAA TTCAAAAACT ATTCCCTATT CGTCAATGTG AAGATTCAGT GTATGCAAAT CGTCATAGAC CTTGTTTAAT GCATCAAATT GGTCGCTGTT TAGCACCATG CGTAAAAGGC ATTATTAGTG ATGAAGATTA TGCCGAGCAA ACTGAATTTA TTCGATTGTT TTTGCAAGGG AAAGATCGAC AAGTTATTCA ATCTCTAGTT GAACAAATGG AAGGGGCGAG TCAGGCTCTT AATTTTGAAA AAGCAGCGAC AATTCGTGAT CAAATTCAAT CAATGAGACG CGTACAAGAA CAACAATATG TTTCGGATGA AAGTAGTGAC GATCTTGATG TATTAGGTTT TACAATTGAA AATGGACTCG CTTGTATTCA CTTGTTAATG ATTCGGCATG GAAAGATTTT AGGCAGCCGT AGCTTTTTTC CTAAAATTCC AGCTAAAACT GAGAAAGAGG AAGTGTTTTC TAGTTTTCTC ACTCAATATT ATTTAAACCA TAGTCAAGGG CGCACTATTC CCAATCGAGT GATTACCAGT TTTGAATTTG AGAGTGAAGG GCTAGAGCAG GCATTAACGG AGCTGTCTGG CCGTAAAGTG TTATTTCAAT TAAACCCTAA AGGAATGAAA GGTCGCTATT TAAAACTCGC GGATACGAAT GCATTGTCGG CCTTAACGAG TAAGGCTAAC CATAAGCTTA CGGTTTATCA GCGATTTAAA CAGTTAGAAG AAGCGCTTTC TTTAGCATCT ATCCAACGTA TGGAATGTTT TGATATCAGT CATACGATGG GAGAGAAAAC CGTTGCGTCA TGCGTTGTAT TTAATCAAGA AGGGCCAGTA AAATCGGAAT ATCGTCGATA CAATATTACC GGTATTACTG GAGGGGATGA TTACGCCGCG ATGGCTCAAG TTTTAGAGCG TCGTTATAGT AAGCAATTGG ATATTGATAA AATCCCTGAT ATTGTGTTTA TTGACGGAGG AAAAGGGCAA TTGAACAGAG CTTACGACGT TATTCGTCAG CATTGGGGAG ATTGGCCTAA AAGACCGTTA TTACTTGGGA TTGCAAAAGG AGTGACAAGA AAGCATGGGC TAGAGACTCT GGTGAAAATT ACAGGAGAAG AGTTTTCGAT GCCAAGTGAT TCGCCTGCAT TGCATTTAAT ACAACATATT CGTGATGAGA GTCATAATCA TGCGATTAGC GGGCACCGTG CTCAGCGCGC TAAAGTAAGA AAAACCAGTA CATTGCAACA CATTGAAGGT GTCGGTCCTA AGCGGAGACA AGCATTATTA CAATATTTAG GTGGTCTACA AGAATTAAAA AAGGCAAGTG TTGAAGAAAT AAGCAAAGTG CCAGGTATTA GCCGCTCTTT AGCAGAAAAA ATACAGGATG CGTTGAAACA AGGGTAA
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Protein sequence | MPPFDSKAFL LSVTHQPGVY RMYNAEAEVI YVGKAKDLKK RLSSYFRSNI PSEKTKALVT HIAQIDVTVT HTETEALILE HNYIKQYLPK YNVLLRDDKS YPYIFISNHK HPRISIHRGT KRKKGEYFGP YPDSGAVRDS LHLIQKLFPI RQCEDSVYAN RHRPCLMHQI GRCLAPCVKG IISDEDYAEQ TEFIRLFLQG KDRQVIQSLV EQMEGASQAL NFEKAATIRD QIQSMRRVQE QQYVSDESSD DLDVLGFTIE NGLACIHLLM IRHGKILGSR SFFPKIPAKT EKEEVFSSFL TQYYLNHSQG RTIPNRVITS FEFESEGLEQ ALTELSGRKV LFQLNPKGMK GRYLKLADTN ALSALTSKAN HKLTVYQRFK QLEEALSLAS IQRMECFDIS HTMGEKTVAS CVVFNQEGPV KSEYRRYNIT GITGGDDYAA MAQVLERRYS KQLDIDKIPD IVFIDGGKGQ LNRAYDVIRQ HWGDWPKRPL LLGIAKGVTR KHGLETLVKI TGEEFSMPSD SPALHLIQHI RDESHNHAIS GHRAQRAKVR KTSTLQHIEG VGPKRRQALL QYLGGLQELK KASVEEISKV PGISRSLAEK IQDALKQG
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