Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2022 |
Symbol | vcmH |
ID | 6987520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 2164796 |
End bp | 2166175 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643380312 |
Product | multidrug efflux pump |
Protein accession | YP_002263401 |
Protein GI | 209695472 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.54695 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTGTCT TCCTTTCTAA TGTTATCGCA CATACTCGCG GTGATTTCCT TAAGCGTTTA ATTCTTATTG CAATACCTAT TGCTCTGCAA AATATTATGT TCTCTAGTCG AGGCTTAGTG GACGTATTGA TGCTGGGTCA ATTAGGTGAA GCTGAGATTG CTGCCGTTGG CGTAGCCAGC CGTGCTACGT TTGTAACAAC GATAATGTTG GTTGGCGTGA CCACGGGGGG CGCGTTGTTA ACGGCTCAGT ATTGGGGGGC ACAAAATAGA GAAGGCGTTC GACAAAGTAC GGCTCTGACT TGGATGGTGA GCATGGCAAT GGCTACTATT GCCGTCGCTT TGTTTTTATT TATGCCTCAT CAAATCATGT CATTAGCGAC CGATTCTCAA GAGGTGATTG ATTTAGGTGC GGATTACTTA TTGATCACGG CACTGACGAT GTACGTAGTG TCATGCGGCA GCAGTATGGC GGTAGGTTTA CGATCGATCC ATCAACCGGG TGTGAGTACT TTTTTTAGTG GTATTGGTAT TGTTGCTAAT GTCTTTTTTA ACTGGGTACT TATTTTTGGT CATTTAGGTG CTCCAGCAAT GGGCATTAAA GGTGCGGCTT GGGCAACATT GATCAGTGGT GTTATTGAAA TCGTATTTTT GTATGGTTAC CTTTACCGTA AATCGCATTT ATTAAGTTTT GGTTTTGATG ACATTAAAGC GGTGATTAAT TGGCCTAAGA TAGCTAAGTT TTTATCACTT TCCTTACCGA CTACGTTTAA TTTTTTAGTT TGGGCGGCGG GTATTTTTAC TTACCACGCG ATTATGGGGC AATCTGGTGT TCAGGGCTTA GCGGCATTGT CTGTGATTTC TCCAATTGAA TCTATTGCGT TGAGTTTTCT TATTGGTGCA GCAGGTGCTG CCTCTGTGCT TATTGGTAAT CAACTGGGTG CTAAGAAATA TGAAGCCGTG TATTACCAAG GGTGGGGAGT GCTTGCATTA AGTGTGGCCA CCAGTGTTGT TATTGCTTTA TTTGTGATGC TATTTCAACA TCAGATTTTG GATATGTTTC CTGCGTTAAG TGACGAAACA AGAATGATTG CTGAAAAGTT CATGGCGATT TTAGCTGTGA TTATTGTGAT CCGCAGTGTG CCATTAACAG CTATTGTTGG CATTTTACGT GCGGGTGGTG ATGTTAAGTT TTGCCTTTAC CAAGACATTG TTTCTCAGTG GTTGATAGGG ATCCCCGTTG CGACTATTGG TGCATTATTC TTAGGATTAG CCCCTGAATA CGTTTATGCG TTATTTGTGG TTGAAGAAAT TGTAAAATGG TTTGGATCTA TCCATCGAAT GAGATCGAAA AAATGGATTA GAAATTTGGT GGATGCGTAA
|
Protein sequence | MSVFLSNVIA HTRGDFLKRL ILIAIPIALQ NIMFSSRGLV DVLMLGQLGE AEIAAVGVAS RATFVTTIML VGVTTGGALL TAQYWGAQNR EGVRQSTALT WMVSMAMATI AVALFLFMPH QIMSLATDSQ EVIDLGADYL LITALTMYVV SCGSSMAVGL RSIHQPGVST FFSGIGIVAN VFFNWVLIFG HLGAPAMGIK GAAWATLISG VIEIVFLYGY LYRKSHLLSF GFDDIKAVIN WPKIAKFLSL SLPTTFNFLV WAAGIFTYHA IMGQSGVQGL AALSVISPIE SIALSFLIGA AGAASVLIGN QLGAKKYEAV YYQGWGVLAL SVATSVVIAL FVMLFQHQIL DMFPALSDET RMIAEKFMAI LAVIIVIRSV PLTAIVGILR AGGDVKFCLY QDIVSQWLIG IPVATIGALF LGLAPEYVYA LFVVEEIVKW FGSIHRMRSK KWIRNLVDA
|
| |