Gene VSAL_I2022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I2022 
SymbolvcmH 
ID6987520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp2164796 
End bp2166175 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content42% 
IMG OID643380312 
Productmultidrug efflux pump 
Protein accessionYP_002263401 
Protein GI209695472 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.54695 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGTCT TCCTTTCTAA TGTTATCGCA CATACTCGCG GTGATTTCCT TAAGCGTTTA 
ATTCTTATTG CAATACCTAT TGCTCTGCAA AATATTATGT TCTCTAGTCG AGGCTTAGTG
GACGTATTGA TGCTGGGTCA ATTAGGTGAA GCTGAGATTG CTGCCGTTGG CGTAGCCAGC
CGTGCTACGT TTGTAACAAC GATAATGTTG GTTGGCGTGA CCACGGGGGG CGCGTTGTTA
ACGGCTCAGT ATTGGGGGGC ACAAAATAGA GAAGGCGTTC GACAAAGTAC GGCTCTGACT
TGGATGGTGA GCATGGCAAT GGCTACTATT GCCGTCGCTT TGTTTTTATT TATGCCTCAT
CAAATCATGT CATTAGCGAC CGATTCTCAA GAGGTGATTG ATTTAGGTGC GGATTACTTA
TTGATCACGG CACTGACGAT GTACGTAGTG TCATGCGGCA GCAGTATGGC GGTAGGTTTA
CGATCGATCC ATCAACCGGG TGTGAGTACT TTTTTTAGTG GTATTGGTAT TGTTGCTAAT
GTCTTTTTTA ACTGGGTACT TATTTTTGGT CATTTAGGTG CTCCAGCAAT GGGCATTAAA
GGTGCGGCTT GGGCAACATT GATCAGTGGT GTTATTGAAA TCGTATTTTT GTATGGTTAC
CTTTACCGTA AATCGCATTT ATTAAGTTTT GGTTTTGATG ACATTAAAGC GGTGATTAAT
TGGCCTAAGA TAGCTAAGTT TTTATCACTT TCCTTACCGA CTACGTTTAA TTTTTTAGTT
TGGGCGGCGG GTATTTTTAC TTACCACGCG ATTATGGGGC AATCTGGTGT TCAGGGCTTA
GCGGCATTGT CTGTGATTTC TCCAATTGAA TCTATTGCGT TGAGTTTTCT TATTGGTGCA
GCAGGTGCTG CCTCTGTGCT TATTGGTAAT CAACTGGGTG CTAAGAAATA TGAAGCCGTG
TATTACCAAG GGTGGGGAGT GCTTGCATTA AGTGTGGCCA CCAGTGTTGT TATTGCTTTA
TTTGTGATGC TATTTCAACA TCAGATTTTG GATATGTTTC CTGCGTTAAG TGACGAAACA
AGAATGATTG CTGAAAAGTT CATGGCGATT TTAGCTGTGA TTATTGTGAT CCGCAGTGTG
CCATTAACAG CTATTGTTGG CATTTTACGT GCGGGTGGTG ATGTTAAGTT TTGCCTTTAC
CAAGACATTG TTTCTCAGTG GTTGATAGGG ATCCCCGTTG CGACTATTGG TGCATTATTC
TTAGGATTAG CCCCTGAATA CGTTTATGCG TTATTTGTGG TTGAAGAAAT TGTAAAATGG
TTTGGATCTA TCCATCGAAT GAGATCGAAA AAATGGATTA GAAATTTGGT GGATGCGTAA
 
Protein sequence
MSVFLSNVIA HTRGDFLKRL ILIAIPIALQ NIMFSSRGLV DVLMLGQLGE AEIAAVGVAS 
RATFVTTIML VGVTTGGALL TAQYWGAQNR EGVRQSTALT WMVSMAMATI AVALFLFMPH
QIMSLATDSQ EVIDLGADYL LITALTMYVV SCGSSMAVGL RSIHQPGVST FFSGIGIVAN
VFFNWVLIFG HLGAPAMGIK GAAWATLISG VIEIVFLYGY LYRKSHLLSF GFDDIKAVIN
WPKIAKFLSL SLPTTFNFLV WAAGIFTYHA IMGQSGVQGL AALSVISPIE SIALSFLIGA
AGAASVLIGN QLGAKKYEAV YYQGWGVLAL SVATSVVIAL FVMLFQHQIL DMFPALSDET
RMIAEKFMAI LAVIIVIRSV PLTAIVGILR AGGDVKFCLY QDIVSQWLIG IPVATIGALF
LGLAPEYVYA LFVVEEIVKW FGSIHRMRSK KWIRNLVDA