Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1997 |
Symbol | nrfA |
ID | 6987503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2138553 |
End bp | 2139989 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 643380294 |
Product | cytochrome c552 |
Protein accession | YP_002263383 |
Protein GI | 209695454 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAAAGC AATGGACCCG TCGTTCAGCC GCTGCAATTG CCATGGTGAC TACGTTATTA CTAAGTAGCC ACAGCTTTGC CGCTTCTGAA AAAACAGAGC GAGTTGACCC TCGCAACGAA GCATATGCAA AACAACACGC CGATCAATAT GAATCTTGGC GTCCCACATC AGACAGCGTA CAAATTGAAG ATGCTTTAGC AGAAGATCCA AACATGGTCA TTTTATGGGC CGGTTATGGG TTTGCTAAAG ACTATAATAA AGCCCGTGGC CATTTCTATG CCATTGACGA TGTACGTGAA ACTTTACGTA CTGCAGGCCC CACCGATGAA AACTCAGGTC CCATGCCGAT GGCATGTTGG AGTTGTAAAA GCCCCGACGT TGGTCGTGTT ATTGAAGAGC AAGGCGAAGA TGGCTATTTC TCAGGTAAAT GGGCACGTCT AGGCAGTGAA ATTCAAAACC CAATTGGGTG TGCCGATTGT CATGACACTC GCAGTGAAGA GTTCAAAAAT GGTGGCCCTG CTTTAGCCAT CACAAAACCT CATGTTGAAC GTGCAATGAA TGCGATTGGC AAGCCTTTCG ATGACCAATC TCGTTTAGAT AAACAAGCCT CTGTTTGCGG TCAATGTCAT GTTGAATACT ATTTCACAGG TAAGACTAAA GCCGTTAAGT TCCCTTGGGA TAAAGGGACA ACCGTTGATG AAATGGAAGA ATACTACGAC GAAATTGGGT TTAGTGATTG GACACACAAA GTATCTAAAG CCCCTATGCT AAAAGCACAA CATCCAGGCT ATGAAACATG GCGAGAAGGC ATTCACGGTA AAAACAAAGT GGTTTGTGTT GATTGTCATA TGCCAAAAGT GACAAGAGAA GACGGTACGG TTTACACCGA TCATAAAGTG GGCAACCCAT TCGATCGTTT TGAAGATACT TGTGCAAATT GTCACACGCA ATCAAAAGAC ATGCTTCGTG AAATCGTTTC TAGTCGTAAA GCTCAAGTTT TAAAAATGAA ACTAACCGCT GAACGCCAAA TTGTCGCGGC ACATTTTGAG GCAGGTGCAG CATGGGATGC AGGCGCAACT AAAGAAGAAA TGGCACCTAT CCTACAAGAT ATTCGCCACG CACAATGGCG TTGGGATTAT GCAATCGCTT CACATGGCAT ACACATGCAT GCACCTGAAG TAGCATTAGA AGTATTAGGT TCGGCGGTTG ATCGTGCCGC AGATGCTCGA ACTAAATTGG TTCGACTGCT TGCGAAAAAA GGCATTACTG ATCCAATCGA GATTCCTGAT ATTTCAACCA AAGCTGCTGC TCAAAAAGCA CTAGGTATGG ATATGGAAGG CATGGAAGCG GAGAAAAAAC ACTTCTTAGA AACCGTTGTT CCTAAATGGG ATCAACAAGC AAAAGAACGT GAAGCCGCAG ATTACCACCC CCTATAA
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Protein sequence | MKKQWTRRSA AAIAMVTTLL LSSHSFAASE KTERVDPRNE AYAKQHADQY ESWRPTSDSV QIEDALAEDP NMVILWAGYG FAKDYNKARG HFYAIDDVRE TLRTAGPTDE NSGPMPMACW SCKSPDVGRV IEEQGEDGYF SGKWARLGSE IQNPIGCADC HDTRSEEFKN GGPALAITKP HVERAMNAIG KPFDDQSRLD KQASVCGQCH VEYYFTGKTK AVKFPWDKGT TVDEMEEYYD EIGFSDWTHK VSKAPMLKAQ HPGYETWREG IHGKNKVVCV DCHMPKVTRE DGTVYTDHKV GNPFDRFEDT CANCHTQSKD MLREIVSSRK AQVLKMKLTA ERQIVAAHFE AGAAWDAGAT KEEMAPILQD IRHAQWRWDY AIASHGIHMH APEVALEVLG SAVDRAADAR TKLVRLLAKK GITDPIEIPD ISTKAAAQKA LGMDMEGMEA EKKHFLETVV PKWDQQAKER EAADYHPL
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