| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1987 |
|---|
| Symbol | rluF |
|---|
| ID | 6987494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2129295 |
|---|
| End bp | 2130239 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643380284 |
|---|
| Product | ribosomal large subunit pseudouridine synthase F |
|---|
| Protein accession | YP_002263375 |
|---|
| Protein GI | 209695446 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.514849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAC CAGAACCTAA ACTAACTCGT TTAAACAAAT ACATTAGTGA TACGGGTTAT
TGCTCACGAA GAGAAGCTGA TAAATTGATT GATCAGCAGC GAATTACTAT TAATGGCAAC
GTTCCTGAAA TGGGTACAAA AGTAGCTGAA GGTGATGATG TTCTGGTTGA TGGAAAACCA
TTGAAAGCAA AGCAAGAACG TATCTATATT GCATTCAATA AGCCAGTCGG TATTACCTGT
ACAAGCGAAC GTCATGTCGA AGGTAATATT ATTGATTATA TTAACCACGA ACAGCGTATT
TTTCCTATTG GTCGATTGGA CAAGCCGTCT GATGGTTTGA TTTTCTTAAC CAGTGATGGA
GATATCGTTA ATAAGATTCT TCGTGCGGGC AATGCGCATG AAAAAGAATA TGTCGTTCGT
GTTGATAAAC CTATTACTGA TGACTTTCTA GCACAAATGG CGGCGGGTGT TCCTATTTTA
GATACCGTAA CGCTACCTTG TCAGGTTAAA CAAGAATCAC GTTTTGTTTT CCGAATTACG
TTAACGCAAG GTTTAAATCG TCAAATTCGT CGTATGTGTG AATACTTAGA TTATGAAGTA
TTTAAACTTA AACGCGTTCG AATTATGAAT ATTGACTTAG GCACACTTGC GTCTGGTGAA
TGGCGTTATT TAACGGCTTC AGAGATGGAA CAAATCAATA ATATGATTGG TACATCAAGT
AAGACAGAAG AAGCGTCACG TAAAGTGAAA GAAGTTGATG GGAAAATTAG GACCATCAAA
AAGGCAAGTT CTGGACGTAA TCATCATTCG AATAATACAT TTAGTCAAAA ACGCCGTGAA
GAATCGAAAG ATCGTGGTTT TGGTAAATCG TACTCTCAAC GAAGAGATGA GGGTAAAGAT
CAAGATAAAC CGCAGTCGAC TATTAAAGTA TGGCGAGCAA AATAA
|
|---|
| Protein sequence | MTSPEPKLTR LNKYISDTGY CSRREADKLI DQQRITINGN VPEMGTKVAE GDDVLVDGKP
LKAKQERIYI AFNKPVGITC TSERHVEGNI IDYINHEQRI FPIGRLDKPS DGLIFLTSDG
DIVNKILRAG NAHEKEYVVR VDKPITDDFL AQMAAGVPIL DTVTLPCQVK QESRFVFRIT
LTQGLNRQIR RMCEYLDYEV FKLKRVRIMN IDLGTLASGE WRYLTASEME QINNMIGTSS
KTEEASRKVK EVDGKIRTIK KASSGRNHHS NNTFSQKRRE ESKDRGFGKS YSQRRDEGKD
QDKPQSTIKV WRAK
|
|---|
| |