Gene VSAL_I1887 details

Gene Information

• Locus tag: VSAL_I1887
• Symbol: ruvC
• ID: 6988274
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2022901
• End bp: 2023422
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 643380188
• Product: Holliday junction resolvase
• Protein accession: YP_002263283
• Protein GI: 209695354
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0817] Holliday junction resolvasome, endonuclease subunit
• TIGRFAM ID: [TIGR00228] crossover junction endodeoxyribonuclease RuvC

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.903201
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTATAA TTTTAGGAAT TGATCCCGGC TCTCGTATTA CCGGTTATGG CGTTATTCGT 
CAAAACGGCC GTCATTTGCA ATATTTAGGG AGTGGTTGTA TTCGGATGTC AGAAAAAGAA 
CTTCCCGGTC GCTTAAAGCA GATCTATGCT GGCGTTTCTG AAATTATTAC GCAGTTTCAA 
CCAGATGTAT TCGCGATCGA GCAAGTATTT ATGTCAAAAA ATGCGGATTC AGCACTTAAA 
TTAGGACAAG CAAGAGGAAG TGCGATTGTT GCTGCCGTTA ATGCAGACCT ACCTGTATAT 
GAATATGCTG CTCGTTTAAT TAAACAAGCC GTAACGGGAA CGGGTGCAGC CGATAAAGCT 
CAAGTTCAGC ATATGGTTAT GACGATGCTT AAATTACCAG CAAGACCACA AGCGGATGCC 
GCTGATGGTT TAGGGGTTGC AATTTGTCAT GCGAATACGA ATAAAACGTT AATCGCCTTA 
GCGGGGAAAG CGACAGGAGC AAGGCGAGGA CGATATCGCT AG 

 

Protein sequence

MSIILGIDPG SRITGYGVIR QNGRHLQYLG SGCIRMSEKE LPGRLKQIYA GVSEIITQFQ 
PDVFAIEQVF MSKNADSALK LGQARGSAIV AAVNADLPVY EYAARLIKQA VTGTGAADKA 
QVQHMVMTML KLPARPQADA ADGLGVAICH ANTNKTLIAL AGKATGARRG RYR