Gene VSAL_I1873 details

Gene Information

• Locus tag: VSAL_I1873
• Symbol: uvrB
• ID: 6988150
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2007661
• End bp: 2009691
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643380173
• Product: excinuclease ABC subunit B
• Protein accession: YP_002263269
• Protein GI: 209695340
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0556] Helicase subunit of the DNA excision repair complex
• TIGRFAM ID: [TIGR00631] excinuclease ABC, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0311007
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTAGTG CGTATGAATT AGTTTCAGAC TATCAACCAG CAGGGGATCA ACCTCAGGCA 
ATTAAAACGT TAAATGAAGG GCTAGAAAAT GGTCTTGCTC ATCAAACGTT GTTAGGGGTT 
ACTGGATCAG GTAAAACATT CACACTGGCG AATGTGATTG CTAAATCAGG TCGTCCTACC 
GTGATAATGG CACATAATAA GACATTAGCT GCTCAACTTT ATGGTGAAAT GAAAGCTTTT 
TTCCCTAATA ACGCTGTGGA ATATTTTGTT TCTTATTTTG ATTATTATCA ACCAGAGGCT 
TATGTCCCAA CCACGGATAC CTTTATAGAA AAAGACTCAT CGGTTAATGA GCATATCGAG 
CAAATGCGTC TCTCTGCGAC AAAAGCATTA TTAGAACGTA AAGATGCGAT TATTATCGCT 
TCTGTTTCTG CGATTTATGG TCTTGGCGAT CCTCAAGCGT ATTTAAGTAT GATGCTGCAT 
TTGAGTCGAG GGGATATCAT TAACCAACGT GATATTTTAC GTCGATTAGC TGAATTACAA 
TATAAACGTA ATGACATGGC TTTTGAGCGA GGTACATTCC GTGTTCGTGG TGAGGTTTTG 
GATGTTTTTC CTGCAGAATC AGAGCATGAA GCGATTCGAA TTGAGCTTTT TGATGATGAA 
GTTGAACGTA TTAGTAAGTT TGACCCATTA ACGGGTTCAA TTATTACTAA AGACATGCCT 
CGTTGTACTA TATATCCGAA AACACACTAC GTAACACCCA GAGAAAAAGT ACTTGATGCC 
ATTGAACAGA TAAAAGTCGA TTTGGCTGAG CGAAAAAAAG AATTATTAGC TAATAATAAG 
CTAGTTGAAG AACAAAGAAT CTCACAACGA ACTCAATTTG ATATTGAAAT GATGAATGAG 
CTTGGTTTTT GTTCTGGTAT TGAAAACTAT TCTCGTTATT TGAGTGGTCG TCCTCAAGGT 
GAAGCGCCGC CCACTTTATT TGATTATTTA CCTAAAGATG GCTTACTGAT TATTGATGAA 
TCCCACATTA CCGTGTCTCA AATAGGGGCA ATGTACAAAG GTGATCGTTC ACGTAAAGAG 
AATTTGGTTG AATACGGTTT TCGGTTACCT TCAGCATTAG ATAACCGTCC TATGCGCTTT 
GATGAATTTG AAGCCCGTGC TCCACAAACG ATTTACGTTT CTGCTACGCC TGGAAAGTAT 
GAAATCGAAA AGTCGGGCTC TGATATTGCT GAGCAATTAG TAAGGCCTAC TGGTTTACTT 
GATCCTATTA TTGAAGTACG CCCCGTTGGA ACTCAAGTGG ATGATTTATT ATCTGAGATC 
AGAATTCGTA CGAAAGTGGG TGAGAGAGTG TTGGTGACGA CGCTTACCAA GCGTATGTCT 
GAAGATTTGA CTGAATATCT TGCAGAGCAT GGAGTGAAAG TTCGTTATTT ACATTCTGAT 
ATTGATACGG TTGAGCGTGT TGAGATCATC CGTGATTTGC GGTTAGGCAA GTTTGATGTG 
TTAGTCGGCA TTAACTTATT GCGTGAAGGC TTAGATATGC CTGAAGTGTC TTTAGTCGCG 
ATTTTAGATG CAGATAAAGA AGGCTTCTTA CGATCCGAAC GATCATTAAT TCAAGCGATA 
GGACGTGCTG CTCGTAATTT AGAAGGTAAA GCGATTTTAT ACGCAGATCG GATCACGGGC 
TCAATGGAAA AAGCCATTGG AGAAACAGAA AGAAGACGTG AAAAACAGAT ATTACATAAT 
GAAGCATTAG GTATTGTGCC AACCGCATTG AAAAAAAATG TGGCTGATAT TCTTGAATTG 
GGGGATATGA CTAAGAATAA ACGGAAAATA GTCGCACCTA AAATGAAGCT ATCAGAAGTG 
GCAGAAGAAG GAGCGAGTTA TCAATCGATG ACGCCGCAGC AATTAGAAAA AGAAGTTCAA 
CGATTAGAAG CAAAAATGTA TCAACATGCG AGAGATCTAG AGTTTGAACA GGCTGCTAAA 
GTAAGGGATG AGGTAGAGAA ATTAAGGAAT CAATTTATAA CGAATAGTTA A 

 

Protein sequence

MTSAYELVSD YQPAGDQPQA IKTLNEGLEN GLAHQTLLGV TGSGKTFTLA NVIAKSGRPT 
VIMAHNKTLA AQLYGEMKAF FPNNAVEYFV SYFDYYQPEA YVPTTDTFIE KDSSVNEHIE 
QMRLSATKAL LERKDAIIIA SVSAIYGLGD PQAYLSMMLH LSRGDIINQR DILRRLAELQ 
YKRNDMAFER GTFRVRGEVL DVFPAESEHE AIRIELFDDE VERISKFDPL TGSIITKDMP 
RCTIYPKTHY VTPREKVLDA IEQIKVDLAE RKKELLANNK LVEEQRISQR TQFDIEMMNE 
LGFCSGIENY SRYLSGRPQG EAPPTLFDYL PKDGLLIIDE SHITVSQIGA MYKGDRSRKE 
NLVEYGFRLP SALDNRPMRF DEFEARAPQT IYVSATPGKY EIEKSGSDIA EQLVRPTGLL 
DPIIEVRPVG TQVDDLLSEI RIRTKVGERV LVTTLTKRMS EDLTEYLAEH GVKVRYLHSD 
IDTVERVEII RDLRLGKFDV LVGINLLREG LDMPEVSLVA ILDADKEGFL RSERSLIQAI 
GRAARNLEGK AILYADRITG SMEKAIGETE RRREKQILHN EALGIVPTAL KKNVADILEL 
GDMTKNKRKI VAPKMKLSEV AEEGASYQSM TPQQLEKEVQ RLEAKMYQHA RDLEFEQAAK 
VRDEVEKLRN QFITNS