| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1872 |
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| Symbol | rnfA |
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| ID | 6989132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2006399 |
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| End bp | 2006980 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643380171 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit E |
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| Protein accession | YP_002263268 |
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| Protein GI | 209695339 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4657] Predicted NADH:ubiquinone oxidoreductase, subunit RnfA |
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| TIGRFAM ID | [TIGR01943] electron transport complex, RnfABCDGE type, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00036506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGAGT ATCTCTTACT TCTTATTGGG ACTGTTTTAG TTAACAACTT TGTATTGGTA
AAGTTTTTAG GACTTTGTCC ATTTATGGGT GTGTCTAAGA AACTAGAAAG TGCCATTGGA
ATGGGCCTTG CAACGACCTT CGTTCTGACT TTAGCGTCAG TATGTTCTTA TCTTATTGAA
ACCTATATTT TAGCGCCTCT AGGGATCGAA TACTTACGCA CGATGAGTTT CATTCTAGTG
ATCGCCGTTG TTGTTCAATT TACAGAAATG GTTGTTCACA AAACCAGTCC GACGCTTTAC
CGTGTACTTG GTATATTTTT GCCACTAATA ACAACAAACT GTGCTGTACT TGGTGTCGCC
CTATTAAATG TCACCGAAAA TCATAACTTT ATTGAATCTA TCATTTATGG TTTTGGTGCT
GCCGTAGGTT TCTCTCTTGT TTTAATCCTT TTCTCTGCCA TGCGTGAACG CATCGCCGCT
GCAGATGTAC CTCTGCCATT TAAAGGCGCA TCGATTGCTA TGATTACTGC AGGATTAATG
TCTTTAGCCT TTATGGGCTT TACTGGTCTA GTGAAATTAT AA
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| Protein sequence | MTEYLLLLIG TVLVNNFVLV KFLGLCPFMG VSKKLESAIG MGLATTFVLT LASVCSYLIE
TYILAPLGIE YLRTMSFILV IAVVVQFTEM VVHKTSPTLY RVLGIFLPLI TTNCAVLGVA
LLNVTENHNF IESIIYGFGA AVGFSLVLIL FSAMRERIAA ADVPLPFKGA SIAMITAGLM
SLAFMGFTGL VKL
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