Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1869 |
Symbol | rnfD |
ID | 6989136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2002600 |
End bp | 2003655 |
Gene Length | 1056 bp |
Protein Length | 351 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643380168 |
Product | electron transport complex protein RnfD |
Protein accession | YP_002263265 |
Protein GI | 209695336 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.173921 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGGCCTTTT TTATCACTAG CTCACCACAC GCTCACAGTA AAAAGAGCAC TCAAACCATG ATGAAAATGG TCGCACTCGC GACTATTCCT GGTTTACTAG CTCAAACCTA CTTCTTTGGC TGGGGGACAT TACTTCAAGT TCTTCTCGCT ATTATTACCG CTATTTTGGC AGAAGCGTTC GTTTTAAAAT GCAGAAAAAG ACCTTTAGCG CCATACTTAA AAGATAATAG TGCTTTATTA ACTGGCTTAT TATTAGCTCT GGCCATTCCA CCTCTTTCCC CATGGTGGCT CACTGTTATT GGTGTGTTTT TTGCCATTGT GATAGCGAAA CATCTGTATG GTGGATTAGG TCAGAATCTA TTTAATCCAG CAATGGCTGC TTATGTTGTT CTTTTGATTT CATTTCCAGT TCAAATGACC ACTTGGTTAC CAGCAAAAGA ATTGTTAGTT GAGCACATTA GCTTCATGGA TTCTGTTTGG TTAATCTTTC ATGGGTTAAG TCAAGATGGG TTCTCTGTAC ATCAACTAAC GATGAACGTT GATGGAATGA CAATGGCTAC GCCATTAGAT ACAGTAAAAA CAGGATTAAA AGCAGGCTTA ACCACCAATG AAATTCTATC TGCACCTATA TTTAATGGCT TTGCAGGATT AGGGTGGCTA TGGGTTAACG TTGGTTTCTT ATTGGGAGGA CTATTTCTTC TGCAACAACG TCTTATTCAT TGGCACATAC CGGTCAGTTT CTTAGCCAGT TTATTTATCG TGAGTTCTTT GTTCGCAGTA TTCTCACCAG ATACAACGAC ATCACCAATC TTCAATCTAT TCTCTGGTGC GACAATGTTA GGTGCTTTCT TTATTGCAAC TGATCCCGTT TCTGCTGCGA CCACAAACAA AGGCCGTTTA TATTATGGCG CTTTAATTGG ACTATTGGTT TATATGATCC GCTCTTGGGG AGGCTTCCCG GATGGCGTTG CTTTTGCCGT TCTATTGGCA AACATGTGTG TCCCCCTTAT TGATTATTAC ACTAAACCAA GAACTTACGG CCATAAGAAA GGATAA
|
Protein sequence | MAFFITSSPH AHSKKSTQTM MKMVALATIP GLLAQTYFFG WGTLLQVLLA IITAILAEAF VLKCRKRPLA PYLKDNSALL TGLLLALAIP PLSPWWLTVI GVFFAIVIAK HLYGGLGQNL FNPAMAAYVV LLISFPVQMT TWLPAKELLV EHISFMDSVW LIFHGLSQDG FSVHQLTMNV DGMTMATPLD TVKTGLKAGL TTNEILSAPI FNGFAGLGWL WVNVGFLLGG LFLLQQRLIH WHIPVSFLAS LFIVSSLFAV FSPDTTTSPI FNLFSGATML GAFFIATDPV SAATTNKGRL YYGALIGLLV YMIRSWGGFP DGVAFAVLLA NMCVPLIDYY TKPRTYGHKK G
|
| |