| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1867 |
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| Symbol | rnfE |
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| ID | 6988920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2001278 |
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| End bp | 2001964 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380166 |
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| Product | electron transport complex RsxE subunit |
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| Protein accession | YP_002263263 |
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| Protein GI | 209695334 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4660] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE |
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| TIGRFAM ID | [TIGR01948] electron transport complex, RnfABCDGE type, E subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.806608 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAACTC ATAAAGAATT AATCAAAAAT GGGTTATGGG ATAACAACCC CGCTTTAGTC
CAATTACTTG GTCTATGCCC ATTATTAGCA GTCTCTGCAA CAGTAACCAA TGCATTAGGG
TTAGGAATTG CAACAACGTT AGTTCTGATT GGATCAAACT TAATCGTTTC TTTAGTCCGA
CAATGGATCC CACAAGAAGT CCGTATTCCT GTGTTTGTTA TGATCATTGC CTCTTTAGTT
ACCTGTGTTC AATTATTAAT GAATGCTTAT GCTTATGGCT TATATCTCTC ATTAGGTATT
TTCATTCCAT TAATCGTTAC CAACTGTATT ATCATTGGTC GAGCCGAAGC CTTTGCTTCT
AAAAATGATC CATTACCTGC CGCTCTCGAT GGGCTATGGA TGGGACTAGG CATGACGTCC
GTACTTGTTT TATTAGGTGC AATACGTGAG ATTCTTGGTA ATGGCACTTT ATTTGACGGT
GCCGATTTAC TTCTTGGCGA TTGGGCTACC ACCTTGCGAA TTGAGCTATT TCATGTTGAT
AGCCATTTCT TACTTGCAAT GCTTCCCCCT GGCGCTTTTC TTGGTGTGGG ATTTTTAATT
GCGATCAAGA ATATCATTGA TAAGAAACTG GCCGATCGTC AACCAAAACA AGAAAAAACG
GAAATTGAAC GCGCTCGCGT CTCTTAA
|
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| Protein sequence | MATHKELIKN GLWDNNPALV QLLGLCPLLA VSATVTNALG LGIATTLVLI GSNLIVSLVR
QWIPQEVRIP VFVMIIASLV TCVQLLMNAY AYGLYLSLGI FIPLIVTNCI IIGRAEAFAS
KNDPLPAALD GLWMGLGMTS VLVLLGAIRE ILGNGTLFDG ADLLLGDWAT TLRIELFHVD
SHFLLAMLPP GAFLGVGFLI AIKNIIDKKL ADRQPKQEKT EIERARVS
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