Gene VSAL_I1862 details

Gene Information

• Locus tag: VSAL_I1862
• Symbol: rnt
• ID: 6987429
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 1997835
• End bp: 1998500
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380161
• Product: ribonuclease T
• Protein accession: YP_002263258
• Protein GI: 209695329
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
• TIGRFAM ID: [TIGR01298] ribonuclease T

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.31939
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGAAG TAGAATTACA TAATCAACTG AAACAGCGTT TTCGAGGCTA TTTTCCAGTC 
GTTATTGATG TTGAAACAGC TGGTTTTAAC TCAAAAACAG ATGCACTTCT TGAGATCTGT 
GCGGTGACAT TAGCAATGGA TGATGAGGGT TACTTAAAAC CCGCGACAAC AATCCATTTT 
CATGTAACTC CGTTTGAAGG CGCAAACCTT GAACAAGAAG CATTAGATTT CATCGGTATT 
CGTGACCCAT TCAGTCCTTT ACGTGGTGCA GTAACAGAAG ATGTGGCTTT AAAAGAAATT 
TTTAAACTCA TTCGTAAAGA GCAAAAACAG CATGATTGCC GACGCGCTAT CATGGTGGCT 
CATAATGCCA ATTTTGATCA CAGCTTTGTA ATGGAAGCCG CTGAACGAAC GAAATTAAAA 
CGCATTCCTT TCCATCCATT CTGTACTTTT GATACTGCCG CAATCAGTGG CTTAGCTCTT 
GGTCAAACCG TATTAGCGAA AGCGTGTAAA ACGGCAGGAA TGGATTTTGA CGGAAAAGAA 
GCACACTCTG CTCTTTATGA TACGGAAAAA ACAGCGGAAC TGTTCTGCCA TATCGTAAAT 
AAATGGAAAG ATCTTGGTGG TTGGCCTCTA GCGCCAGAAC CAGAAAATGA TACTAATAAT 
AAATAA 

 

Protein sequence

MSEVELHNQL KQRFRGYFPV VIDVETAGFN SKTDALLEIC AVTLAMDDEG YLKPATTIHF 
HVTPFEGANL EQEALDFIGI RDPFSPLRGA VTEDVALKEI FKLIRKEQKQ HDCRRAIMVA 
HNANFDHSFV MEAAERTKLK RIPFHPFCTF DTAAISGLAL GQTVLAKACK TAGMDFDGKE 
AHSALYDTEK TAELFCHIVN KWKDLGGWPL APEPENDTNN K