Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1797 |
Symbol | |
ID | 6987378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1919516 |
End bp | 1921201 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643380104 |
Product | mechanosensitive ion channel |
Protein accession | YP_002263201 |
Protein GI | 209695272 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.433096 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCTATT TACTTTGTTT TCTTCTTTTA TTTTCATCCC TTACCTATGC CAATGAAACT CAAGACATCG AGCAATTACA AAATATTAAT GCTGAAATTG CACGACTAAA GCAAGAGTCT GCCTCATTCA AAGGCAATGA CTTAGCGGTT ATTCGCGTAC AGCAAGTAGA AAAAAACAAT GAACTCAGAA TCGTTCTGTC TGAGTTAATC AACAAGCACA CCGCAGAAAA TACGCCACTG TTGGTGAGTG AAGTTGAAGA TCAAATTCGT TATGCTGATC GTTCTTTTCT CTATTTAGGC AAAGAGCTAA AATCAAAAAA AGATAAAATA GATACGGCGG ATGTCGAGCA TAAACTCGCT TTACAAAACA CATTAAATGA ATCAAGAAGT TATTATTACA CTTCCCTCTC AGATCAACTT CAAAATTACC GCTGGTTAAA CAAACTCGGC AAACCAAACC AAGCAAAAGT CGATGCATTC AAGTTAGTTA TCGACCAAAA AATTAAGTTT CTGTCTGCCT CTTTGAGTTT TGATTCAAGC AGAGAACAGC TATTAGCGGA TCAACTTCAG CGTTCGTCTG ATTCAGAGAA ATCCTCTCTG ACCTTAGAGC ACCTCTTCTT TCAAAGAAAA GTGACCAACT CAACGGATGG GTTAATTAAA CTGATTAACA TTGCTGACCA ATTAAATATC AGCACGACAA ACTACAAACG TCAGGTCTTT GCCACTACGG GCAATTTAAC AGAAGATATT TTAAGTTTTC CCGTGATGGC AGCGATTTTA AGTAATTGGA TCACCGACGG CAGTAACTGG TTATTCAAAC ACGCACCTGA TCAGCTCTTA AAATTCTTTG TCTTTATCTT AATCATTTTT GCCACTCGTT TATTAGCAAG GCTGACTCGA CGTGTGGTAC TCAAAGCCGT TGTTCAACCT CATTTACGTA TGAGTAAATT GATGCAAGAT TTCTTTGTTT CGATGTCGAG TAAACTGATT TTCTTCATTG GTATTCTCAT TGCCTTTTCT AAAATTGGGT TGGATTTGGC TCCGGTTCTC ACCGGTTTCG GTGTTGCTGG TATTATTATT GGTTTTGCAT TGCAAGATAC GCTATCCAAC TTTGCATCAG GCATGATGCT GCTAATTTAT CGCCCGTTTG ATGTGGGTGA TTTAGTGGAT GCAGGGGGCG TATCAGGAAA AGTGAGCCAC ATGAGTTTAG TAAACACCAC GATTAAAACG TTTGATAACC AAATTATCAT CTTACCCAAC AGTAAAATTT GGGGAGACGT AATAAAAAAC GTAACTCACG AACGATTACG CCGTGTCGAT ATGGTGTTTG GCATTGGCTA CGAAGACAGC ATCGAACACG CTGAAAAAAT CTTAGCCGAA ATTATTGATA CTCACCCTGC GGCCTTAAAA AAACCAGAGC CCAATATTCG AGTACATACT CTTGGTGCCT CATCGGTTGA TTTTATTGTA CGACCTTGGG TAAAAACCGA AGATTATTGG GATGTGTATT GGGATGTGAC TCGTGAAGTG AAATTACGCT TTGATAAAGA AGGGATCTCG ATTCCTTTTG CTCAACAAGA TGTGCATGTA CATTTTGCTA AAAAAGCGAA GAAACCAAAA GCAACAACAG GGATAGCGGG AAAACTGAGT AACGTCATTG ACTCTGTTCG ATCAAAAGAC AGCTAA
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Protein sequence | MRYLLCFLLL FSSLTYANET QDIEQLQNIN AEIARLKQES ASFKGNDLAV IRVQQVEKNN ELRIVLSELI NKHTAENTPL LVSEVEDQIR YADRSFLYLG KELKSKKDKI DTADVEHKLA LQNTLNESRS YYYTSLSDQL QNYRWLNKLG KPNQAKVDAF KLVIDQKIKF LSASLSFDSS REQLLADQLQ RSSDSEKSSL TLEHLFFQRK VTNSTDGLIK LINIADQLNI STTNYKRQVF ATTGNLTEDI LSFPVMAAIL SNWITDGSNW LFKHAPDQLL KFFVFILIIF ATRLLARLTR RVVLKAVVQP HLRMSKLMQD FFVSMSSKLI FFIGILIAFS KIGLDLAPVL TGFGVAGIII GFALQDTLSN FASGMMLLIY RPFDVGDLVD AGGVSGKVSH MSLVNTTIKT FDNQIIILPN SKIWGDVIKN VTHERLRRVD MVFGIGYEDS IEHAEKILAE IIDTHPAALK KPEPNIRVHT LGASSVDFIV RPWVKTEDYW DVYWDVTREV KLRFDKEGIS IPFAQQDVHV HFAKKAKKPK ATTGIAGKLS NVIDSVRSKD S
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