| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1790 |
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| Symbol | |
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| ID | 6987371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1907988 |
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| End bp | 1911206 |
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| Gene Length | 3219 bp |
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| Protein Length | 1072 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643380097 |
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| Product | restriction enzyme |
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| Protein accession | YP_002263196 |
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| Protein GI | 209695267 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA ACGAATTCAA TAAAGTAGAA GCCCCTGCCA TTGCTCAGTT GGTTCAACTT
GGGTGGACTT ACATTCAAGG TAAACAATTG TCACCAGATT ATGCTTGCGC CGATGGCATT
CCTGAGCGTA CTTACCTGCG TGATGTGGTG TTAGTCAAAC GCCTTGAAGC CGCGATTAAA
CGCATTAACC CGTGGATAAG CGACGAGAAT CTTCGCAAAG TCTCTCGTGA AGTCACGCAC
CCAAATTTCG CCGCCTTAAT GGAATATAAC CACGCCTTCT ATCAAACCAT GGTTAATTAC
CTCTCAGTAG AGCAAGACTT AGGCAAAGGG CGAAAAGGGC AGACGGTTAA ACTGGTTGAT
TTTGAAACCC CAAGCAACAA CGAATTCTTA TGTACCAATC AATTTAAAGT AGAAGGCGCA
AACCAAAGCA TCATTCCAGA TATTGTCTGC TTTGTTAATG GCATTCCGCT CGCCGTGATT
GAGTGTAAAT CACCGTATAT CTCTGCGCCG ATGGGTGATG GCATTAATCA ATTACGCCGT
TACGCGAATC TACGCCATAC CGATGATCAC GAAGGGGCTG AAAAACTGTT TTGGTATAAC
CAACTCATGG TATCGACTTG CCGAGATCAA GCCAAAGTGG GCACCATCAG CTCAAACAGT
CAGCATTATG GTGATTGGAA AGACGCGTAT CCTTTTTCTG ATGCACAATT AGCAGAACAA
TCATTACGCG ATAATATCGT TCCGCTTCAT TCTGCTATTA CAGTTCAAAT CCCTGACGAT
GCGTTAGACG AGAGTGAAGA TAACTTAGCA AAGCATGATG AGTGGCAACA AGCCGCCGAG
CCAGCAGCAA GTTATGAGGT ATTAACCGAA GTCACCGCGC AACAGCGTTT GTTAGCGGGC
ATGTTTAGTA TTTTAAACTT TCTCGATATT CTGCAAAACT TCATATTATT TGAAACTGAT
GACGGTCGCT TAATTAAAAA AGTGGCGCGT TATCAGCAAT ATCGTGCCGT TAATAAAGTG
ATTGAACGCT TGAAATCAGG CAAGGATCGA AAAGAAAGAA GTGGCGTAGT TTGGCATACT
CAAGGCAGTG GTAAATCGCT GACCATGGTG ATGCTTGCCG TAAAAATGCG TCGTGATGCC
GAATTAAAAC AGTACAAATT GGTGTTTATT ACCGACCGAA CTCAACTTGA TGAGCAGTTA
TCAAATACCT TCCGCGATGC ACAAGGTGAG ACGGTGTATA ACGCAGGCTC TGTGGCAGAA
TTAAAAGAAT TACTAAAGAA AGACAGCTCT GATCTTGTGA CCGCGATGGT ACAAAAATTT
GCTGATCTCG AAAAAGAACA AGAGAAGCAA AAAACGGTAG CAGAAGGCTT TGCTGATTTA
AACCCAAGCG ACAAAATCAT TGTTCTTGCC GATGAAGCGC ACCGAACCCA ATTTGGTGGT
TTGGCAATGA CGATTAATGC CGCGTTACCC AATGCGCCTA AAATTGGTTT CACCGGAACA
CCATTGCTGA AAACTCAAAA AATGAGCCAA GCGTTTGGTG GTTACATCGA TGAATACAAA
ATAAACCAAG CGGTAGAAGA TGGCGCAACG GTTAAACTGC TTTATGAAGG CCGTGAAGTG
AAATCGGAAG TCGCAGGTGA TTCACTCGAT AAGCTGTTTG AAGAATACTT TGGCGAATAT
ACCGAAGAAG AACAACGTGA GATCAAAAGA AAATACGGTG TAGAGAAGGC GGTTCGTGAA
GCTCCAGCTC GTATTCGTTG GGTTTGTATC GATTTAATCA AACACTATAA AGAACACATT
CGTCCTGATG GCTTTAAAGC AATGATCGTG GTGGGAAGTC GTCATGCGGC AGCTATCTTT
AAAAAGACCC TAGATGAATT AGGTGCGCCT CACTCAGAGG TGATTATCTC GGGCGATCAT
AATGATGAAA AGTACCTGAC TCAATACACA GATAAAGTGC ATCAAAAGAA AGTCATCACC
AATTTTAAAA AGCCTTTTGG TATTGATAAA CAAGGCACTG AAGAGAAAAA TAAAAAGTTT
AATAATACCG CTTTTTTGAT AGTCAAAGAC ATGCTGTTAA CGGGCTTTGA TGCGCCTATT
GCTCAAGTGA TGTACATCGA CAGAAAGCTG CAAGATCACA CCTTAATGCA GGCCATTGCT
CGCGTTAACC GAACTTATAA AGGTAAAGAG TGTGGTTATG TGGTGGATTA TCATGGCTTA
GCAACGCATC TTACTGAGGC GTTAGAACTG TTTAGCAGCG ATGATGTAGA AGGCTCGTAT
CAAAGCTTAA AAGATGAAAT CCCAAAGCTA AAAGCCAAGC ATACTCGTGC CATGTCGTTC
TTTAAGCAGG TGCTTAAAAA TGGCAAGCCG AGTGACGATA TTGATGATTA CGTTTTAGCA
TTAAAAGATG AAACAGTGCG AGCGCAATTT GACATGGCAT TCAAACAGTT TGGTAAGCAG
TTAAACGTTA TTTTGCCTGA TGCCGAAGCG GTTCCGTTTA TTCCTGATAT GAAGTTATTA
GGCAAGATCC ACAATGCCTC AAAAACCAAA TTTCGAGACG AAGGGCTAGA CATGAGCGAG
ATTGGTGCCA AAGTGCGCCA ATTGGTGGAT GAGCATATTC TCAGTACGGG TGTTGATCCT
AAAATCGCAC CGATAGATTT ACTGGCGGCT AATTTTAAAG AAAGCGTTAC AGCGATTAAA
TCAGACGAAT CAAAAGCATC TGAAATAGAA AGTGCCATTA AGCACCACAT CACCATTAAT
TTGGATGAAG ACCCAGAATT TTACCGTTCG TTGAGTTTGC GCCTGCGTGA CATTATCGAA
AAAACAGCAG GCAAATGGGC ACAGCAACTT GAGTTAATGT TAGAGATGAG AGGCGATATT
GGCTCGGCTT ACCAACAAGC GGCGCAAGAT GTCGGTTTGT CTAACACGGA GTTTGCTTTT
TACAATATTC TTATCGCCGA AGTCACTAAC GTCAGTGATG GCGATGTGAT TGCTGAATCA
ACCCATGATG AGATTAAAGC GGTAACTCAA GCGTTAGTGG TTATGCTGGA TGAAGCAACG
GAAATTGTCG ACTTCTTCAA TAAACAAGAT GAAATAAAAC GCATGAAGAA AGAGATCAAG
CGTGCTGTTC TTGATCAACC ATTTGGTGAT AAAGCTTTGG TAACGGTTCT ACAAGATCGC
TTTATGGATT TGGCGAAAAC CAAGTTCGGA AACAAATAG
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| Protein sequence | MKNNEFNKVE APAIAQLVQL GWTYIQGKQL SPDYACADGI PERTYLRDVV LVKRLEAAIK
RINPWISDEN LRKVSREVTH PNFAALMEYN HAFYQTMVNY LSVEQDLGKG RKGQTVKLVD
FETPSNNEFL CTNQFKVEGA NQSIIPDIVC FVNGIPLAVI ECKSPYISAP MGDGINQLRR
YANLRHTDDH EGAEKLFWYN QLMVSTCRDQ AKVGTISSNS QHYGDWKDAY PFSDAQLAEQ
SLRDNIVPLH SAITVQIPDD ALDESEDNLA KHDEWQQAAE PAASYEVLTE VTAQQRLLAG
MFSILNFLDI LQNFILFETD DGRLIKKVAR YQQYRAVNKV IERLKSGKDR KERSGVVWHT
QGSGKSLTMV MLAVKMRRDA ELKQYKLVFI TDRTQLDEQL SNTFRDAQGE TVYNAGSVAE
LKELLKKDSS DLVTAMVQKF ADLEKEQEKQ KTVAEGFADL NPSDKIIVLA DEAHRTQFGG
LAMTINAALP NAPKIGFTGT PLLKTQKMSQ AFGGYIDEYK INQAVEDGAT VKLLYEGREV
KSEVAGDSLD KLFEEYFGEY TEEEQREIKR KYGVEKAVRE APARIRWVCI DLIKHYKEHI
RPDGFKAMIV VGSRHAAAIF KKTLDELGAP HSEVIISGDH NDEKYLTQYT DKVHQKKVIT
NFKKPFGIDK QGTEEKNKKF NNTAFLIVKD MLLTGFDAPI AQVMYIDRKL QDHTLMQAIA
RVNRTYKGKE CGYVVDYHGL ATHLTEALEL FSSDDVEGSY QSLKDEIPKL KAKHTRAMSF
FKQVLKNGKP SDDIDDYVLA LKDETVRAQF DMAFKQFGKQ LNVILPDAEA VPFIPDMKLL
GKIHNASKTK FRDEGLDMSE IGAKVRQLVD EHILSTGVDP KIAPIDLLAA NFKESVTAIK
SDESKASEIE SAIKHHITIN LDEDPEFYRS LSLRLRDIIE KTAGKWAQQL ELMLEMRGDI
GSAYQQAAQD VGLSNTEFAF YNILIAEVTN VSDGDVIAES THDEIKAVTQ ALVVMLDEAT
EIVDFFNKQD EIKRMKKEIK RAVLDQPFGD KALVTVLQDR FMDLAKTKFG NK
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