| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1563 |
|---|
| Symbol | ctaD |
|---|
| ID | 6987200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1675242 |
|---|
| End bp | 1676672 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379895 |
|---|
| Product | cbb3-type cytochrome c oxidase subunit I |
|---|
| Protein accession | YP_002262995 |
|---|
| Protein GI | 209695066 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.123879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAT TACAGCAGCA TGAACAAAAC TACAACTATA CCGTTGTTCG CCAATTCACC
TTAGTTACCA TTCTATGGGG TATTGTTGGC ATGGGTGTAG GTGTATTAAT TGCCGCTCAA
TTAGTCTGGC CGCAACTGAA TTTTGACACA CCATGGCTTA CGTATAGCCG TTTGCGTCCT
CTGCATACTA ATGCAGTGAT TTTCGCATTC GGTACAAGTG CCCTATTTGC AACATCTTAT
TATGTTGTTC AGCGTACTTG TCAAACACGT TTGTTTGGTG GTCCATTAGT TGCGTTCACC
TTCTGGGGAT GGCAAGCAAT TATCTTAGCA GCAGCAATTT CGTTGCCTCT AGGAATGACA
TCAGGAAAAG AATATGCAGA ATTAGAGTGG CCGATCGATA TCGCTATCAC TTTAGTTTGG
GTGGCTTATG CCATTGTATT CTTTGGAACT CTGTTTAAAC GTAATACTTC TCATATTTAC
GTTGCAAACT GGTTCTTTGG AGCCTTCATT TTAACCGTTG CCGTTCTTCA TATTGTGAAT
AGCCTTGCTG TTCCAGTATC ACTGACTAAA TCATATTCGA TTTATTCTGG TGCGGTAGAT
GCGATGGTTC AATGGTGGTA TGGCCATAAC GCAGTAGGTT TCCTATTGAC TGCTGGCTTC
TTAGGAATGA TGTACTATTT CGTACCAAAA CAAGCAGAAC GTCCAGTTTA TTCTTACCGT
TTATCTATTG TTCACTTCTG GGCATTAATA TCACTTTATA TCTGGGCTGG TCCTCACCAC
TTACATTATA CCGCTCTACC TGACTGGACT CAGTCTTTAG GTATGGTGAT GTCATTGGTT
CTATTCGCAC CGTCTTGGGG CGGAATGATC AATGGTATAA TGACGTTATC TGGTGCTTGG
CATAAGCTAC GTTATGACCC TATCCTTCGA TTCTTAGTCG TTTCTTTATC GTTCTATGGT
ATGTCTACCT TTGAAGGTCC GATGATGGCG ATTAAATCAG TTAACGCACT CTCTCATTAT
ACTGACTGGA CTATCGGTCA TGTTCATTCT GGTGCGTTAG GTTGGGTTGC TATGGTAACG
ATTGGTTCAC TGTACCACTT AATTCCTAAG CTGTTTGGTC AAGAGCGCAT GTACTCTGTA
TCACTCATCA ATGTTCATTT TGGGTTAGCG ACAATTGGTA CTGTTCTTTA TATCGTGGCA
ATGTGGATTT CAGGTGTGAT GCAAGGTCTA ATGTGGCGTG CGGTTAACGC TGATGGCACA
TTAACGTATA GCTTTGTTGA ATCATTAGAA GCCTCTTACC CATTCTATTT CGTTCGTTTT
GTTGGTGGTT TAATCTTCCT TTCAGGTATG TTCCTACTTG CATATAATGC ATATAAGACC
ATTTCTTCAC CGAAGAATAG CCTAAAAGCA ATTCCTCAAC CGGCACAATA A
|
|---|
| Protein sequence | MSQLQQHEQN YNYTVVRQFT LVTILWGIVG MGVGVLIAAQ LVWPQLNFDT PWLTYSRLRP
LHTNAVIFAF GTSALFATSY YVVQRTCQTR LFGGPLVAFT FWGWQAIILA AAISLPLGMT
SGKEYAELEW PIDIAITLVW VAYAIVFFGT LFKRNTSHIY VANWFFGAFI LTVAVLHIVN
SLAVPVSLTK SYSIYSGAVD AMVQWWYGHN AVGFLLTAGF LGMMYYFVPK QAERPVYSYR
LSIVHFWALI SLYIWAGPHH LHYTALPDWT QSLGMVMSLV LFAPSWGGMI NGIMTLSGAW
HKLRYDPILR FLVVSLSFYG MSTFEGPMMA IKSVNALSHY TDWTIGHVHS GALGWVAMVT
IGSLYHLIPK LFGQERMYSV SLINVHFGLA TIGTVLYIVA MWISGVMQGL MWRAVNADGT
LTYSFVESLE ASYPFYFVRF VGGLIFLSGM FLLAYNAYKT ISSPKNSLKA IPQPAQ
|
|---|
| |