Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1553 |
Symbol | uup |
ID | 6987193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1663185 |
End bp | 1665095 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643379885 |
Product | ABC transporter ATPase component |
Protein accession | YP_002262985 |
Protein GI | 209695056 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.318875 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATTAC TTACAATTAA TAATGGTCAA TTAGCGTTTG GTGATCATCC GTTATTAGAC AAATCAGATT TTGCTCTACA AGAAAATGAA CGCGTATGTT TGGTTGGCCG TAATGGTGCG GGTAAATCAA CGCTAATGAA AGTAATTGCT GGTGATATCC TTATGGATGA TGGCAAATTA CAAATTAATC AAGATGTGGT GGTTTCTCGT TTAGAGCAAG ATCCACCGCG TAATGAAACG GGCAGTGTTT TTGATTATGT ATCTGAAGGC CTCGCAGAAG CCGGTAAATA CTTAAAAGAA TATCATCATA TCTTAGATTT ATTAGCGACT GATCCAAGCG AATCAAACAT TAATAAACTA GCGAGAGCAC AAGAGCAGAT TGATAACCTT AATGCATGGC ATTTTGATAC ACGTATTCAA TCTGTTTTAG AATCTCTAAA ACTTGATGGT GCAATGCTAT TAACCGATTT ATCGGGTGGT TGGCAACGTA AAGCCGCATT GGCTCGCGCA TTGGTATCTG ACCCAGATGT ATTGCTTCTT GATGAACCAA CGAACCATTT GGATGTTACA ACGATTGTTT GGCTTGAAAG TTTCTTAAAA GACTTTAAAG GTTCAATCAT CTTTATTTCT CATGACCGTG CATTCATTCA ATCAATGGCT ACACGAATTG TGGATTTAGA CCGTGGTAAC TTATCTTCTT ATCCTGGTAA TTATGAAGAG TACTTACTGG CTAAAGAAGA AGCGCTACGC GTAGAAGCTG ATCAAAATGC ACAATTTGAT AAAGTGCTAG CTCAGGAAGA AGCTTGGATT CGTGAAGGCG TTAAAGCGCG TCGTACTCGA AATGAAGGAC GTGTGCGTGC CTTAAAACAA TTACGTCGTG AGCGTTCAGA TCGTCGTGAA GTTGTGGGTA AAGCGAATAT TCAAGTGGAT GGTGGAAATC GTTCAGGTAA AATTGTATTT GAAGCCGAGA ACCTTCATTA CTCAATTGAT GGTAAAAACA TTGTTAAGAA CTTCAGCTTC AATGTTATGC GTGGTGATCG CATTGCCTTA ATTGGTGCTA ATGGTTGTGG TAAGAGTACC TTGCTTAAAC TGATGCTTGA CCAATTACAG CCAGATGCAG GTAAATTGTA TTGCGGTACA AAACTTGAAG TGGCATATTT TGACCAATAT CGTGAAGCGT TAGACCCAGA AAAAACGGTT ATCGATAACT TGGCTGACGG TAAGCAAGAA GTGACAGTGA ATGGCCGTGA GCGTCATGCT TTGAGCTACT TGCAAGATTT CTTATTCTCT CCAAAACGTG CTCGTCAACC AGTGAAAGCA TTGTCTGGTG GTGAGAAAAA CCGTTTATTA CTTGCGCGTT TATTCCTTCG TCCAAACAAT TTATTGATTC TTGATGAACC AACCAATGAT TTAGATATCG AAACATTGGA ACTTTTAGAA GAATTACTTG CCAACTATGA AGGTACATTA TTATTAGTAA GTCACGATCG TCAGTTCGTA GATAATACAG TAATGACCAG TTGGATCTTT GAAGGTGAGG GCCAGATCGA AGAATTCGTC GGTGGCTATC ACGATGCTCA ACGACAACGT GCTAATGTAC AAATAAGCCG TGATGCAATG GCACCAACAG TAAAAGTGAA AACTGAATCT GTTGCTGCTA AAAGCCCGGT AGTCGAGCAA GCGAAACCAA AGAAACTGTC TTATAAGTTA CAGCGTGAGC TTGAATTGCT GCCTGAAACA TTAGAAAGAT TAGAAAACGA AATTACAGAA CTTCAAGAGA AAGTGAACGA CGCAACTTTC TTCCAACAAG ATCCTAAAAC AACAGAAGCT GTTTTAGAAC GTTTAGCTCA AACAGAGCAA GAGTTGGAAG TGGCATTCGA GCGTTGGGAA GAACTTGAAG CTCTACAATA G
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Protein sequence | MALLTINNGQ LAFGDHPLLD KSDFALQENE RVCLVGRNGA GKSTLMKVIA GDILMDDGKL QINQDVVVSR LEQDPPRNET GSVFDYVSEG LAEAGKYLKE YHHILDLLAT DPSESNINKL ARAQEQIDNL NAWHFDTRIQ SVLESLKLDG AMLLTDLSGG WQRKAALARA LVSDPDVLLL DEPTNHLDVT TIVWLESFLK DFKGSIIFIS HDRAFIQSMA TRIVDLDRGN LSSYPGNYEE YLLAKEEALR VEADQNAQFD KVLAQEEAWI REGVKARRTR NEGRVRALKQ LRRERSDRRE VVGKANIQVD GGNRSGKIVF EAENLHYSID GKNIVKNFSF NVMRGDRIAL IGANGCGKST LLKLMLDQLQ PDAGKLYCGT KLEVAYFDQY REALDPEKTV IDNLADGKQE VTVNGRERHA LSYLQDFLFS PKRARQPVKA LSGGEKNRLL LARLFLRPNN LLILDEPTND LDIETLELLE ELLANYEGTL LLVSHDRQFV DNTVMTSWIF EGEGQIEEFV GGYHDAQRQR ANVQISRDAM APTVKVKTES VAAKSPVVEQ AKPKKLSYKL QRELELLPET LERLENEITE LQEKVNDATF FQQDPKTTEA VLERLAQTEQ ELEVAFERWE ELEALQ
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