| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1436 |
|---|
| Symbol | |
|---|
| ID | 6987091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1550854 |
|---|
| End bp | 1551594 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643379784 |
|---|
| Product | LamB/YcsF family protein |
|---|
| Protein accession | YP_002262884 |
|---|
| Protein GI | 209694955 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTA ATTGTGATAT GGGTGAAAGT TTTGGATTAT GGGCGTTAGG TGAAGATGCC
GCCGTTATGC CAGCGTTAGA TATGGCGAAT ATTGCGTGTG GTATGCATGC TTCGGATCCA
AGCGTAATGA TGAAAACCGT TGCGCTAGCA AAAGACAATG GCGTGATGGT TGGTGCTCAT
CCCGGCTACA ACGATCTACA AGGCTTTGGC CGACGTGATA TTGCAATGAA CGCTACAGAT
TTAGCTGCGT TATTTATCTA TCAATTGGGT GCATTGCAGG GGATATGTCA AAGTCAAAAT
ACAAGATTAA GTTACGTGAA ACCTCATGGT GCGTTATACA ACGCGATGAT GAAAGACGAT
GCGATTCTTG AAACCTTATT GGGTGCATTA CAGCGTTACG ATGTCACTTT ACCTTTCGTG
GTAATGGCGG TGCCTGACCA CGCTCGCTAT CAAACGTTGG CCGATAAATT TGGCATTACA
TTATGGTTTG AGGCGTTTGT TGACCGAGCT TATGACGAAG AAGGTCGACT CGTGCCACGC
AGTGTACCTA ATTCAAGTCA CTATACCGAT GAAGCGATTC AACACCAAGC CGATCAATTG
ATTGATCAAG GTTGTGTCAC CACTCTTTCC GGAAAAACAA TCGCGATTCA CGCAGATACC
TTATGTATTC ATGGTGAGGG CCCTTTTGCG GTATCGACAG CGACGTATTT ACGTAAAAAG
TTGCAGAAAA AGGCGGAGTA A
|
|---|
| Protein sequence | MKINCDMGES FGLWALGEDA AVMPALDMAN IACGMHASDP SVMMKTVALA KDNGVMVGAH
PGYNDLQGFG RRDIAMNATD LAALFIYQLG ALQGICQSQN TRLSYVKPHG ALYNAMMKDD
AILETLLGAL QRYDVTLPFV VMAVPDHARY QTLADKFGIT LWFEAFVDRA YDEEGRLVPR
SVPNSSHYTD EAIQHQADQL IDQGCVTTLS GKTIAIHADT LCIHGEGPFA VSTATYLRKK
LQKKAE
|
|---|
| |