| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1369 |
|---|
| Symbol | rbsB |
|---|
| ID | 6989071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1490100 |
|---|
| End bp | 1490978 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643379725 |
|---|
| Product | D-ribose transporter subunit RbsB |
|---|
| Protein accession | YP_002262824 |
|---|
| Protein GI | 209694896 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.470278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT TAGCAACCTT AATCTCTGCG GCACTACTTT CTGCCTCTTT CTCATCGACG
GCTTCGGCTC AAGATACAAT GGCAATGGTC GTCTCTACCT TGAACAACCC ATTCTTTGTA
ACAATGAAAG AAGGCGCTGA AGCAAAAGCA AAAGAACTAG GCTACAAACT GATTGTTCTG
GATTCTCAAA ATGATCCAAG TAAAGAGCTT TCAAACGTTG AAGATCTAAC GGTTCGTGGT
GTTAAAGCCA TTTTGATTAA CCCAACCGAT TCAGATGCGG TATCAAATGC AATTCGCATG
GCTAACCGTT CTGGAATTCC TGTCCTAACG CTTGATCGTG GTGCAAGCCG TGGTGATGTA
GTGAGCCATA TTGCGTCTGA TAACGTGGCT GGTGGTGAAA TGGCGGGTAA ATACATCATG
GAAAAAGTGG GCCAAAAAGC GCGCGTTATC CAACTGGAAG GTATTGCAGG TACGTCTGCT
GCGCGTGAAC GTGGCGAAGG TTTCATGAAA ACAGTAAACA GCGGTGATTT AGTGCTACTT
GGTAGCCAAC CGGCTGATTT CGACCGCACT AAAGGTCTAA ACGTAATGGA AAACATGCTT
GCTGCAAACC CTGATGTGCA AGCGGTATTT GCTCAAAATG ATGAAATGGC ATTGGGTGCA
CTTCGCGCTG TGCAAGCGTC AGGTAAAGAC GTATTAATCG TCGGCTTTGA TGGCACTGAA
GATGGTATTG CAGCCGTTAA CCGTGGCATC TTGGGCGCAA CTATCGCTCA ACAACCCGAT
TTAATCGGTG CACTGGGTGT TGAAACGGCG GATAAAGTAC TTAAAGGCGA AACGGTTGCT
AAATATATCC CTGTTGAACT AAAAGTTATC ACTAAATAA
|
|---|
| Protein sequence | MKKLATLISA ALLSASFSST ASAQDTMAMV VSTLNNPFFV TMKEGAEAKA KELGYKLIVL
DSQNDPSKEL SNVEDLTVRG VKAILINPTD SDAVSNAIRM ANRSGIPVLT LDRGASRGDV
VSHIASDNVA GGEMAGKYIM EKVGQKARVI QLEGIAGTSA ARERGEGFMK TVNSGDLVLL
GSQPADFDRT KGLNVMENML AANPDVQAVF AQNDEMALGA LRAVQASGKD VLIVGFDGTE
DGIAAVNRGI LGATIAQQPD LIGALGVETA DKVLKGETVA KYIPVELKVI TK
|
|---|
| |