Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1364 |
Symbol | |
ID | 6987033 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1482981 |
End bp | 1485653 |
Gene Length | 2673 bp |
Protein Length | 890 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643379720 |
Product | putative exported nuclease |
Protein accession | YP_002262819 |
Protein GI | 209694891 |
COG category | [R] General function prediction only |
COG ID | [COG2374] Predicted extracellular nuclease |
TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.587865 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAGCA GTGAAATGAA AACAACCCAA TTAAAAACAA CACTTGCAGC AGCTGTTGGC TTAGCACTCT CAGGCAGCGC TTACGCGGAT GTGATTATAT CTCAATACGT AGAAGGTGGA AGTTACAATA AATCGTTAGA AATCAGTAAT ACAGGAGACA GTTCAGTTTC TCTCGCGGGG TATGTTCTTA AATCAAAATA CAATGGTTTA AACGAATGGC AAAAGGATCT TGATCTTTCT GCCATTACGC TTGATGCAAA GAGCGTTTAT GTCATCTCAA ACAGTCGAGC CTCTGATGCG ATCAAAGCCG TAACCAATAA TATTGAAAGC ATCGTAAATC ATAACGGCGA TGACACTTAC ATGCTGTTTA AAGATGGGAT AGAACACGAC CGTATTGGGG TCGATGGCGA CGTAGATTGG GGCAAAGATA AGAGCTTTGT CCGCTCAACA TTAAGTCCAA GTACAACATT TGATCCAACG ATGTGGCTTG AGTTACCAAA AGACAATATT GATGGCCTTG GTACTTACCA AGAAGGCATT ACTCCTCCTC TCCCTTTTGC TTGTGAAACC GATTCAGGCA CGACCCCTAC TTTTACAGAG ATTAATGAGA TTCAAGGTAC GGGAAATAAA TCGCCGTTAA TCACGAGTGG CTTTATTTCA GACGACGAGT ATTTTGTTCA AGGCATTGTG ACTGCTCGGG GCGACAGCTT GTTAAAAGGC TTTTACCTGC AAGGCCTAAA TAATGACAAT GATCCAAACA GCTCTGAAGG TATTTTCGTC AGTACTGGCA GCGCCCCTTC CCAAGAGATC CAACCAGGGG CATTAGTCTG TGTTAAAGCA AAAGTTCAAG AATATTATAG CCAAACACAA TTAAAACCAG ACACCAATAA CGTCGTTGTT CAAGGTTCAC AATCTCCTGT TGATGTCACT GAACTGGTCA TCAATGAGAA TGAAACATTA GCAGATGCAT TAGAGCGTCA CGAAGGCATG CACGTTAAAT TAACCTCTCA TTCCGATTTA CGAATTACGC GTAATTTCAG TTTTGATTAC GACAGTAAAC GCAACAATAT GGTGTTGTCT CATGGTGCAC CACTGTATAA ACCAACTCAG TTATTTGCAG CAGAAAGTAC AGAGGCCATT CAGCTAGCAA AAGAGAATGC TAAGCGTCAA ATCACCATAG AATCAGACAA CAAAGCCGCA AACGGAAAAG TGCCTTACTT CCCAGAGTTT GCCTCTGATA TCGACCAAGA TGGCAGTGCC GATTCTTACC TTCGTCTTGG TGCTAGAATT GAAGGACTAG AAGGAGTGGT TGCTTATTCT TACGGTCAAT ATCGCTTGGT TGCAAGTAAT ACCATCACAC AAGAAAACAT CATTACTAAA GCCTTAAATA CCGATGGTTC TACGCTCTTC AATGTAGAAC GTACTGACAA ACCAAGTATT GATGATGAAG ATTTAACTAT TACCAGTTTT AACGTTTTAA ACTACTTCAC CTCTGTTTCT ATAAACGGTG ATGCAAACCC AACAGGTCAA AACCGTGGCG CAACAACAGC TGATGAGTTT GCAATTCAAC AAGCAAAAAT TCTATCGGCC TTAACCGCCA TTGATGCTGA CATTATTGGT TTGATGGAAA TTGAAAATAA TGGCTTTGGT GAAAACAGTG CCATTCATGA TCTCACTGCC GTGTTAAATG CACAATTTGA AGACAAAGAA GATCACTATA AATACGTTGA GATAGACGCT GCGGATAAAT ACCAAGGTGA GTATTTAGGC TCTGACGCCA TTATGGTCGC CCTGTTGTAT CGTCCTGACA AAGTAAGATT AGAAGGTGAT GCACGCGTAA TAAAAACACC GGAGCAACAC GTCACGGCAA ACACCGTCAC TCGAGATAAC AACGGCACTA TTGAATCAAA CCCTGCGTAT GATAAATATC AACGCCACAG CTTGGTTCAA GAGTTTATTG TAAAAGAAGC CAAAGAGCCG CTAACCGTTG TCGTTAATCA CTTAAAATCA AAAGGATCAG AGTGTATTGA ACAATGGCAG AACTTCAATG AAGACTCAGA AGCGCCTGAC TTACAAGGCA ATTGTAATCG CTTTAGAGTC TCAGCAGTAA AAGCCATTGG TGATGAATTA AGTACAGTTG AAGGCGATAT TCTGATCTTA GGTGACATGA ATGCGTATGG TATGGAAGAC CCATTACTTA CGCTGACAGA TTACAGCCCT GATAAATACG ATCGCGACAT CTTTACGGCG TCTTATACCA CTCTTGGAAA CGATACCGCC GGTAACCCTA TCCCTTATGA AGAAACAGGC AGCCAAATCA AAAAAGGGTA CGGATACCTT AATCTAAATA CCTTGTTGCA CAGCACAGAA ACCTTCTCTT ATACCTACTC AGGGGAATTA GGTAATCTTG ATCACGCACT CGCTAATGAA TCTCTTGCAA AACGAGTCAC TCAAATTGAA GATTGGCACA TTAATGCCAC AGAAAGTAAC TTGTTTGAAT ACAGCTCAAA GTACACTGGC GACATGGCAA AATACAACGA TATGTATTCG GCTTCTGACC ACGATCCTGT TGTTATTTCT CTTGAATATG CAGGCTCACT CAACCTACTT GCTTTATCTT CACTCTTTGG TTTTGGCTAT CTGCGTCGAA AACTAAACAA AGACAATAAA TAA
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Protein sequence | MESSEMKTTQ LKTTLAAAVG LALSGSAYAD VIISQYVEGG SYNKSLEISN TGDSSVSLAG YVLKSKYNGL NEWQKDLDLS AITLDAKSVY VISNSRASDA IKAVTNNIES IVNHNGDDTY MLFKDGIEHD RIGVDGDVDW GKDKSFVRST LSPSTTFDPT MWLELPKDNI DGLGTYQEGI TPPLPFACET DSGTTPTFTE INEIQGTGNK SPLITSGFIS DDEYFVQGIV TARGDSLLKG FYLQGLNNDN DPNSSEGIFV STGSAPSQEI QPGALVCVKA KVQEYYSQTQ LKPDTNNVVV QGSQSPVDVT ELVINENETL ADALERHEGM HVKLTSHSDL RITRNFSFDY DSKRNNMVLS HGAPLYKPTQ LFAAESTEAI QLAKENAKRQ ITIESDNKAA NGKVPYFPEF ASDIDQDGSA DSYLRLGARI EGLEGVVAYS YGQYRLVASN TITQENIITK ALNTDGSTLF NVERTDKPSI DDEDLTITSF NVLNYFTSVS INGDANPTGQ NRGATTADEF AIQQAKILSA LTAIDADIIG LMEIENNGFG ENSAIHDLTA VLNAQFEDKE DHYKYVEIDA ADKYQGEYLG SDAIMVALLY RPDKVRLEGD ARVIKTPEQH VTANTVTRDN NGTIESNPAY DKYQRHSLVQ EFIVKEAKEP LTVVVNHLKS KGSECIEQWQ NFNEDSEAPD LQGNCNRFRV SAVKAIGDEL STVEGDILIL GDMNAYGMED PLLTLTDYSP DKYDRDIFTA SYTTLGNDTA GNPIPYEETG SQIKKGYGYL NLNTLLHSTE TFSYTYSGEL GNLDHALANE SLAKRVTQIE DWHINATESN LFEYSSKYTG DMAKYNDMYS ASDHDPVVIS LEYAGSLNLL ALSSLFGFGY LRRKLNKDNK
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