Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1358 |
Symbol | |
ID | 6988677 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1475814 |
End bp | 1478078 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643379716 |
Product | VgrG preotein, VgrG-2 |
Protein accession | YP_002262815 |
Protein GI | 209694887 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTAATG AGGTCGAGTT TAAGTTTGAA GTCCTTGGCA CGAATCATGA ATTTCGTGTT GAGAGTTTCA ATGTGGTCGA AGAGGTATCC CAACCTTTTA AAATAACCTT GTCGTTATTG TCATTAGACC CTGATATAGC GTTTGATGTA TTAAGCCGAA AACCCGCATT ATTAACCGTT CTTGGGCAAG GAATGAATGC CGGACGATTA TTTCATGGTG TCGTAAATGA AGTTCGGTAT TTAGGCGCAG GTCGTCGTTT CTCTCATTAT CAAATTACGC TCGTACCTCA ACTGTGGTTT TTAACCCAAC GCCAAGATTG TCGTATTTTC CAAGATAAGT CGATTGTTGA TATTTTAACT GAAGTGCTCG ATGGGGCGTC AGTGACTGAT TATCGCTTTG AACTGTCTAA TACCTATCCC AACCAAGAAT ACTTACTTCA ATATCGTGAA ACTGACAGTC ATTTTGTTCA GCGTTTATTA GCAGAGCACG GTTTATGGTA TTACTTCGAA CATACTACAA GTAACCATAG CATGGTGATT ATTGATAAAA ATGATGCCAT TCCAGAGTTA ATTAGTACTC CTCTAAACGC GTCTTATATT GGCCCTTTGG TGTACCAATC TGAAGGAGGT GGTAATGCTG ACAGAGAGCA TATATTTGAG TTAAGCAGCT ATAACCGTGT TCGTACTGGT CATGTAATTC AAACCGATTA TAACTACGAT CAACCCCGCA TCCCACAACA AGTGCAACAA CAGGGTGATC GAGATACTGA TTTAGCATTC TTTGATTACC CAGGACGCTA TGGGGAAAGC GTAGAAGGCC AACAACGTAG CAATTACCTT ATCGCTGATC ATCAGGTTGA AAATCATCAA ATTGAAGCCG AAAGTAACAT TATGCGTTTA ACTGCTGGTT ATAGTTTTGA TTTGGCAAAG CACCCAAGAA ACGCAATCAA TCGAGATTAC ACGCTCACAG CGATAACGCA CAGTGGTTAT AACCCACAAG TGCACGAAGA AGAATCAAGT GGTCTGCCGA CGACGTATCA AAACTATTTT AATTGTATTC CTCGCGATGT TGGCTATAAA GCACCTAAAT TAGCCGCCCC AGTGGTTGAT GGCCCTCAGA CGGCAGTCGT GGTTGGCCCC GCAGGAGAAG AAATATATAC CGATCCAATG GGACGTATTA AAGTCCAATT TCACTGGGAT CGTTATGGTA ACAACGATGA GCATTCAGGT TGTTGGCTTC GTGTTAGTCA ATCGATGGCC GCGCCAACGT GGGGCGCGGT GTATTTACCG AGAATAGGGC ACGAAGTGGT GGTGACCTTC TTAGAGGGAG ATCCAGACAG ACCCTTAGTG ACAGGTGCGG TATACAACGG CTTACACACG CCCCCTTATG CCTTGCCAGA GCATAAAACC AAAACGGTAT TTCGGACTCA AACCCACAAA GGGGAAGGGT ACAACGAAAT GTCGTTTGAA GACGAAGCCA ATCAAGAAGA AGTTTATTTT CATGCTCAGA AAGACATGAG AACTAAGGTT CTAAATAACC GATTCAGAAC CATAGGGAAT GATGAAGAGT TAGAAGTTGG ACGTAACCAA GAAAACATCA TTAACAAAGA CAGAAAAGAA ACCATAGAAG GCCATAAAAC ATCAATAACA AACCAAACCT TCTCAGAAAC CGTCGAGCAA GACGTAACGG TTAAATACAA CGCCAACATA GAAAAGAGCG TGGCTGTTGA ACAGACGTTG ACAATCTACG AAAACCGACA GAGTACGATA GGTAAGAACG ACGAACTCAC GATTAAAGGC GAACAAAGCC GCATTACTAT GGGAGCAAGT AGCAGTGATA TTAGCGCTGA CGATACGCTA ACCGTTGGTC AGAATCTCAC AATAGAAGTC GGAAATAATG CATCCATTAA ATCGGATGCT GACCATACCA TAATCAGTGC CGATGAAATT ACGGCTCAGG TGGGAAGCTC GGGTTTTATT CTAAAAAATA ACGGCACCAT TACCTTGTAT GGCTCAGATA TTACGGTTGA TGGCTCTGGC TCGGTCGCCT TGGTTGGGGG AAATGTTGCG ATTAACCCTG GCGCAGCATC TAGTCAAAGT AGCAGTGTAA GCGCGAACCT TCCTCGTACC TTCTCAATGT CACCATTAGC ATCAACCAAA CCAGTGATGA ATTCAGCGGC GTACAGTGAA ATGGTTGAAG ATGGCGCATT AATGAAAGAG TTATGCCAAT GTGGTAAGGA GGGCATATGC AAGCTGCACA GCTAA
|
Protein sequence | MANEVEFKFE VLGTNHEFRV ESFNVVEEVS QPFKITLSLL SLDPDIAFDV LSRKPALLTV LGQGMNAGRL FHGVVNEVRY LGAGRRFSHY QITLVPQLWF LTQRQDCRIF QDKSIVDILT EVLDGASVTD YRFELSNTYP NQEYLLQYRE TDSHFVQRLL AEHGLWYYFE HTTSNHSMVI IDKNDAIPEL ISTPLNASYI GPLVYQSEGG GNADREHIFE LSSYNRVRTG HVIQTDYNYD QPRIPQQVQQ QGDRDTDLAF FDYPGRYGES VEGQQRSNYL IADHQVENHQ IEAESNIMRL TAGYSFDLAK HPRNAINRDY TLTAITHSGY NPQVHEEESS GLPTTYQNYF NCIPRDVGYK APKLAAPVVD GPQTAVVVGP AGEEIYTDPM GRIKVQFHWD RYGNNDEHSG CWLRVSQSMA APTWGAVYLP RIGHEVVVTF LEGDPDRPLV TGAVYNGLHT PPYALPEHKT KTVFRTQTHK GEGYNEMSFE DEANQEEVYF HAQKDMRTKV LNNRFRTIGN DEELEVGRNQ ENIINKDRKE TIEGHKTSIT NQTFSETVEQ DVTVKYNANI EKSVAVEQTL TIYENRQSTI GKNDELTIKG EQSRITMGAS SSDISADDTL TVGQNLTIEV GNNASIKSDA DHTIISADEI TAQVGSSGFI LKNNGTITLY GSDITVDGSG SVALVGGNVA INPGAASSQS SSVSANLPRT FSMSPLASTK PVMNSAAYSE MVEDGALMKE LCQCGKEGIC KLHS
|
| |