Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1332 |
Symbol | sbcD |
ID | 6987009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1444489 |
End bp | 1445733 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643379692 |
Product | exonuclease subunit SbcD |
Protein accession | YP_002262791 |
Protein GI | 209694863 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTATTT TACATACTTC TGATTGGCAC CTAGGTCAAA ACTTCTTCAC AAAAAGCCGC CGTAATGAAC ATCAAAAATT CATTGCTTGG TTACTTGAGC AAGTTCAAGA AAATGTCATT AATGCCGTGA TCATTGCAGG AGATGTGTTT GATACAGGCG CGCCACCAAG TTATGCCCGT GAAATGTACA ATCAATTTGT GGTGGAGATG AACAAAGTAA ACTGCGAATT AATTGTTCTT GGCGGTAACC ATGATTCGGT ATCGACGTTA AATGAATCGA AGCAACTGTT AGCGCATTTA AACGCACGAG TAATCGCGAA TACCAATGAA GACTTATCAA CTCAATTATT AACGCTGCCT AATTCAGATG GCACTGTGGG TGCAATTCTA TGTGCAGTGC CTTTTATTCG CCCTCGTGAC GTTGTCACTA GTGTGGCGGG GTCTTCTGGT GTAGAAAAGC AGCAAGCACT CGGCGAAGCC ATTAAATCTC ACTATCATCA GCTATACCAA AAAGCATTAG AATTGAGAGA AGAGTTAGCA CTTGATGTGC CTATTATCGC AACAGGTCAT TTAACCGCCC TAGGGGTTAA ACAATCCGAT TCTGTGCGTG ATATTTATAT TGGTACTTTG GATGGTTTTG CCGCTGATGG TTTTCCGCCT GCGGATTACA TCGCGCTTGG TCATATTCAC CGCCCTCAAC TTGTGGCTAA ATCGGAACAC ATCCGTTATT CCGGCTCACC AATTCCATTG AGCTTTGATG AATTAAAATC GCAAAAACAA GTCGTAATGG TCGAGTTTGA TAAAGATAAA GTGAGTCACA TTACGCCAAT TAATGTGCCG ATATTTCAAG AAATGAAAGC ATTGAAAGGC GATTTAGAGA CCATTGAGCA AGAGCTAGCG CAATTTAAAG AGTGCGAAGA AACGACGTGG TTGTGCATTG AAGTCGAAGT TCAAGATTAC TTGTCCGATC TACAGCAACG TATTCAAACA TTAACTCAAG ATTTGAATGT GGAAGTGCTG CAATTGCGTC GAGCGAGAAA CCGCAACGAG CAAACACTGG CGCAAGAAAA AACAGAAACG CTAGCGGAGT TAACGCCTTT TGATGTATTT ACCAAACGTA TTGAGCAAGA AATATTTGAG ACAGAAAAAG AGCAGCAACG CGCAGAGCGA ATGACAACCA AATTTAAACA GATTTTGTCA GAAGTAGAAC ATAAAGATAC TGATCCACAA GAAGGTGATG CATGA
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Protein sequence | MRILHTSDWH LGQNFFTKSR RNEHQKFIAW LLEQVQENVI NAVIIAGDVF DTGAPPSYAR EMYNQFVVEM NKVNCELIVL GGNHDSVSTL NESKQLLAHL NARVIANTNE DLSTQLLTLP NSDGTVGAIL CAVPFIRPRD VVTSVAGSSG VEKQQALGEA IKSHYHQLYQ KALELREELA LDVPIIATGH LTALGVKQSD SVRDIYIGTL DGFAADGFPP ADYIALGHIH RPQLVAKSEH IRYSGSPIPL SFDELKSQKQ VVMVEFDKDK VSHITPINVP IFQEMKALKG DLETIEQELA QFKECEETTW LCIEVEVQDY LSDLQQRIQT LTQDLNVEVL QLRRARNRNE QTLAQEKTET LAELTPFDVF TKRIEQEIFE TEKEQQRAER MTTKFKQILS EVEHKDTDPQ EGDA
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