Gene VSAL_I1332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1332 
SymbolsbcD 
ID6987009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp1444489 
End bp1445733 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content42% 
IMG OID643379692 
Productexonuclease subunit SbcD 
Protein accessionYP_002262791 
Protein GI209694863 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTATTT TACATACTTC TGATTGGCAC CTAGGTCAAA ACTTCTTCAC AAAAAGCCGC 
CGTAATGAAC ATCAAAAATT CATTGCTTGG TTACTTGAGC AAGTTCAAGA AAATGTCATT
AATGCCGTGA TCATTGCAGG AGATGTGTTT GATACAGGCG CGCCACCAAG TTATGCCCGT
GAAATGTACA ATCAATTTGT GGTGGAGATG AACAAAGTAA ACTGCGAATT AATTGTTCTT
GGCGGTAACC ATGATTCGGT ATCGACGTTA AATGAATCGA AGCAACTGTT AGCGCATTTA
AACGCACGAG TAATCGCGAA TACCAATGAA GACTTATCAA CTCAATTATT AACGCTGCCT
AATTCAGATG GCACTGTGGG TGCAATTCTA TGTGCAGTGC CTTTTATTCG CCCTCGTGAC
GTTGTCACTA GTGTGGCGGG GTCTTCTGGT GTAGAAAAGC AGCAAGCACT CGGCGAAGCC
ATTAAATCTC ACTATCATCA GCTATACCAA AAAGCATTAG AATTGAGAGA AGAGTTAGCA
CTTGATGTGC CTATTATCGC AACAGGTCAT TTAACCGCCC TAGGGGTTAA ACAATCCGAT
TCTGTGCGTG ATATTTATAT TGGTACTTTG GATGGTTTTG CCGCTGATGG TTTTCCGCCT
GCGGATTACA TCGCGCTTGG TCATATTCAC CGCCCTCAAC TTGTGGCTAA ATCGGAACAC
ATCCGTTATT CCGGCTCACC AATTCCATTG AGCTTTGATG AATTAAAATC GCAAAAACAA
GTCGTAATGG TCGAGTTTGA TAAAGATAAA GTGAGTCACA TTACGCCAAT TAATGTGCCG
ATATTTCAAG AAATGAAAGC ATTGAAAGGC GATTTAGAGA CCATTGAGCA AGAGCTAGCG
CAATTTAAAG AGTGCGAAGA AACGACGTGG TTGTGCATTG AAGTCGAAGT TCAAGATTAC
TTGTCCGATC TACAGCAACG TATTCAAACA TTAACTCAAG ATTTGAATGT GGAAGTGCTG
CAATTGCGTC GAGCGAGAAA CCGCAACGAG CAAACACTGG CGCAAGAAAA AACAGAAACG
CTAGCGGAGT TAACGCCTTT TGATGTATTT ACCAAACGTA TTGAGCAAGA AATATTTGAG
ACAGAAAAAG AGCAGCAACG CGCAGAGCGA ATGACAACCA AATTTAAACA GATTTTGTCA
GAAGTAGAAC ATAAAGATAC TGATCCACAA GAAGGTGATG CATGA
 
Protein sequence
MRILHTSDWH LGQNFFTKSR RNEHQKFIAW LLEQVQENVI NAVIIAGDVF DTGAPPSYAR 
EMYNQFVVEM NKVNCELIVL GGNHDSVSTL NESKQLLAHL NARVIANTNE DLSTQLLTLP
NSDGTVGAIL CAVPFIRPRD VVTSVAGSSG VEKQQALGEA IKSHYHQLYQ KALELREELA
LDVPIIATGH LTALGVKQSD SVRDIYIGTL DGFAADGFPP ADYIALGHIH RPQLVAKSEH
IRYSGSPIPL SFDELKSQKQ VVMVEFDKDK VSHITPINVP IFQEMKALKG DLETIEQELA
QFKECEETTW LCIEVEVQDY LSDLQQRIQT LTQDLNVEVL QLRRARNRNE QTLAQEKTET
LAELTPFDVF TKRIEQEIFE TEKEQQRAER MTTKFKQILS EVEHKDTDPQ EGDA